Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe05g00627	ATGGATTTTTCCTGCTCCGAGTTAGAAGGAAATCTGGTTGTAAAACCGGAGAATTCTTCACTGAGACGCCGAGATTTTCATTCTGATGAAGAGGTGATACTGGCGACGAACCGGCCGAAGAAGCGAGCAGGTCGGATAGTGTTTAAAGAGACCAGACACCCTGTTTACAGAGGAGTCCGGAGAAGAAACTCCGGAAAGTGGGTTTGCGAGGTGCGAGAACCGAAGAAAAAGACTCGCATATGGCTCGGAACTTATCCGACCGCTGAAATGGCGGCTCGTGCTCACGACGTTGCCGCTGTCGCTCTGAGAGGCAGGACCGCGTGTCTCAATTTCGCCGACTCGGCTTGGCGGTTTAAGGTGCCGGCATCGACCGACTCGAAGGAAATAAGGATAGCGGCGGCTCGGGCGGCGGAGGCGTTTGGGAGAGAAGGAAATGCAGAGAAAGAGCGGGAGAAGGGGAACACGAACGAGGAAGAGGAGGCTGTGTTTTATATGGACGAAGAAGAGGAGGATATTTTCGGAATTTCCAGGGCATCTGACGTGGCAGATCTTCCTTTACATTCTCCCCCACATCTCAGCACCGGTGATGACGTAATGTTGGATGAGTTGGATATCGATACTGACGTGTCATTATGGAGTTTTTCTATTTGA	651	51.46	MDFSCSELEGNLVVKPENSSLRRRDFHSDEEVILATNRPKKRAGRIVFKETRHPVYRGVRRRNSGKWVCEVREPKKKTRIWLGTYPTAEMAARAHDVAAVALRGRTACLNFADSAWRFKVPASTDSKEIRIAAARAAEAFGREGNAEKEREKGNTNEEEEAVFYMDEEEEDIFGISRASDVADLPLHSPPHLSTGDDVMLDELDIDTDVSLWSFSI	216

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
5	20182305	20182955	-	Bpe018043.1	Bpe05g00627	104404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bpe05g00627	216	Gene3D	AP2/ERF domain	55	113	IPR036955	GO:0003700\|GO:0006355
	Bpe05g00627	216	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	19	216	IPR045277	GO:0003700
	Bpe05g00627	216	ProSiteProfiles	AP2/ERF domain profile.	55	112	IPR001471	GO:0003700\|GO:0006355
	Bpe05g00627	216	CDD	AP2	56	114	IPR001471	GO:0003700\|GO:0006355
	Bpe05g00627	216	SUPERFAMILY	DNA-binding domain	55	114	IPR016177	GO:0003677
	Bpe05g00627	216	PRINTS	Ethylene responsive element binding protein signature	56	67	IPR001471	GO:0003700\|GO:0006355
	Bpe05g00627	216	PRINTS	Ethylene responsive element binding protein signature	78	94	IPR001471	GO:0003700\|GO:0006355
	Bpe05g00627	216	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F	19	216	-	-
	Bpe05g00627	216	SMART	rav1_2	55	118	IPR001471	GO:0003700\|GO:0006355
	Bpe05g00627	216	Pfam	AP2 domain	54	104	IPR001471	GO:0003700\|GO:0006355

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bpe05g00627	Bpe11g00686	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe05g00627	Bpe-Chr5:20182305	Bpe12g00412	Bpe-Chr12:9705559	6.97E-71	dispersed
	Bpe11g00686	Bpe-Chr11:5285809	Bpe05g00627	Bpe-Chr5:20182305	4.14E-58	wgd
	Bpe05g00627	Bpe-Chr5:20182305	Bpe07g00955	Bpe-Chr7:15349260	3.12E-61	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	21458	PF00847	AP2	9.50E-15	CL0081	Bpe	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe05g00627	-		-	zju:107434878	211.46