Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe05g00631 | ATGGCGACTTCTTCTTCTTCTTCTTCAGGCACCGGAAGCAGCTATGATACGCCGTGGGTGGAGAAGTACAGGCCAAACAAGGTCGCAGACATTGTTGGAAATGAAGACGCTGTTTCAAGGCTCCAAGTCATTGCTCGCGATGGGAACATGCCAAACCTCATCTTAGCCGGGCCTCCTGGAACTGGGAAAACAACTAGCATACTTGCTCTTGCGCACGAGCTGTTAGGACCAAATTACAAGGAGGCTGTGTTGGAGCTAAATGCATCTGATGACAGGGGAATAGATGTTGTAAGGAATAAAATTAAAATGTTTGCCCAGAAAAAAGTAACTCTGGCACCGGGCAAGCATAAAATAGTTATCTTGGATGAAGCTGATAGCATGACATCTGGAGCACAACAAGCTTTGAGGAGGACTATGGAAATATATTCAAACACTACCCGCTTTGCTCTTGCATGCAATACATCTGCAAAAATAATTGAGCCTATTCAGAGTAGATGTGCGATTGTCAGATATTCAAGATTATCTGATCAAGAGATACTTGGTCGTCTGATGGTGGTTATTCAAGCTGAAAGGGTTCCCTATGTGCCAGAGGGCCTTGAGGCAATCATCTTTACAGCTGATGGAGACATGAGACAGGCATTGAACAACTTACAAGCTACATACAGCGGATTTCGATTTGTAAACCAAGACAATGTGTTCAAGGTCTGTGATCAGCCTCATCCGTTGCATGTGAAGAACATGGTACGTAACGTGATTGAAGGAAAATTTGACGAAGCTTGTTCAGGTTTGAAGCAACTATACGACTTGGGTTATTCTCCCACTGACATCATCACAACCCTTTTCCGCATCATTAAAAACTATGACATGGCTGAGTTTCTGAAATTGGAATTTATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCATATCTTCAGTTATGTGGTCTTTTGGCCAAACTTTCTATTGCACGTGTAACAGCCCAAGCTGAATGA | 1008 | 43.15 | MATSSSSSSGTGSSYDTPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLAPGKHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRYSRLSDQEILGRLMVVIQAERVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVIEGKFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEFLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIARVTAQAE | 335 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 20196570 | 20198400 | - | Bpe018047.2 | Bpe05g00631 | 104408 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe05g00631 | 335 | Gene3D | - | 11 | 174 | IPR027417 | - | |
| Bpe05g00631 | 335 | Gene3D | - | 175 | 238 | - | - | |
| Bpe05g00631 | 335 | Gene3D | - | 239 | 330 | - | - | |
| Bpe05g00631 | 335 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 7 | 332 | - | - | |
| Bpe05g00631 | 335 | CDD | HLD_clamp_RFC | 174 | 236 | - | - | |
| Bpe05g00631 | 335 | Pfam | ATPase family associated with various cellular activities (AAA) | 53 | 171 | IPR003959 | GO:0005524|GO:0016887 | |
| Bpe05g00631 | 335 | Pfam | Replication factor C C-terminal domain | 239 | 324 | IPR013748 | - | |
| Bpe05g00631 | 335 | CDD | AAA | 32 | 169 | - | - | |
| Bpe05g00631 | 335 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 15 | 237 | IPR027417 | - | |
| Bpe05g00631 | 335 | SMART | AAA_5 | 49 | 175 | IPR003593 | - | |
| Bpe05g00631 | 335 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 7 | 332 | - | - | |
| Bpe05g00631 | 335 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 238 | 328 | IPR008921 | GO:0003677|GO:0006260 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe04g00011 | Bpe-Chr4:114133 | Bpe05g00631 | Bpe-Chr5:20196570 | 3.15E-63 | dispersed | |
| Bpe05g00631 | Bpe-Chr5:20196570 | Bpe14g00388 | Bpe-Chr14:3651418 | 4.23E-69 | dispersed | |
| Bpe08g00232 | Bpe-Chr8:1315721 | Bpe05g00631 | Bpe-Chr5:20196570 | 5.43E-14 | transposed | |
| Bpe13g00897 | Bpe-Chr13:15027056 | Bpe05g00631 | Bpe-Chr5:20196570 | 6.72E-17 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe05g00631 | K10755 | - | qsu:111999495 | 611.683 |