Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00632 AGACAAGGTGAAGCTTTGAAAATGGCTTCCTCCGACGGCCTCGTCGACTCGACGCCGTTTCTGGCGAATCATAGCCGATCTTCTAGCGAAACGAATTCCAGCAGTCGATTTGTGCAGAGGCAGAGCCTGCGTCAGGCGGCGAGGTTTTTGAGGCAAGCGAGCAGTCGGAGGACGTTGCGCGAGTCCTCGATGCGGGTGAGAGAGACTGCAGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCCAAACCGATTGTGATTCTAGATATCGTTTGGAATGTCGCATTTGTGGCCGTGGCTGCTATAATACTGGTTCTGAGCCGTAAGGAGTCTCCGAATGTGCCGTTGAGACTGTGGCTCGCGGGATATGGTTTCCAATGCGTTCTTCATATAGTGTGTGTTTGTTCCGAATATATACGTCGCAGACAACGGCTCCGAATTCACATGGTTAATTCTGTCGGAGACGGAAACCAGACTCCCCGGGGATCAAGTTCCGGTTCGAGGCAGAATTTATCGTTGGGGCAATTAAATGAGGAGCAGCCGAGCGTTGCAAAACACCTCGAGTCTGCAAATACGATGTTTTCGTTCGTCTGGTGGATTGTTGGATTCTATTGGGTCTCATCTGGAAGTCAAGGTTTAGCTCATGCCTCTCCTCTGCTTTACTGGCTGTGCCTAATCTTCTTAGGATTCGATGTGTTTTTTGTCATATTCTGCGTTGCTTTGGCCTGTGTAATCGGCATCGCTGTTTGTTGCTGTCTCCCATGTATTATTGCGCTTCTATATGCTGTGGCTGACCAGTTTTGTAAGCTTTGTTCGATTCTACGGTCGAAATTTTCACTATCGCACTCGATTGATCTTTCCCCCATTTCACCATTTTGTGGAGAATTCACACACTCCAATTTGTTGTTTCATGATTTGTATGAAGAATGCTGCATCTGCCTTTCTGCTTATGATGATGGAGTTGAACTGAGGGAACTTCCTTGTGGCCACCATTTTCACTGTACATGCATAGACAAATGGCTACACATTAATGCTACTTGTCCGCTCTGTAAATACAACATTCTGAAGTTTAACATCCACGGACAAGACGAAGTTTGA 1104 47.37 RQGEALKMASSDGLVDSTPFLANHSRSSSETNSSSRFVQRQSLRQAARFLRQASSRRTLRESSMRVRETAAEQLEERQSDWAYSKPIVILDIVWNVAFVAVAAIILVLSRKESPNVPLRLWLAGYGFQCVLHIVCVCSEYIRRRQRLRIHMVNSVGDGNQTPRGSSSGSRQNLSLGQLNEEQPSVAKHLESANTMFSFVWWIVGFYWVSSGSQGLAHASPLLYWLCLIFLGFDVFFVIFCVALACVIGIAVCCCLPCIIALLYAVADQFCKLCSILRSKFSLSHSIDLSPISPFCGEFTHSNLLFHDLYEECCICLSAYDDGVELRELPCGHHFHCTCIDKWLHINATCPLCKYNILKFNIHGQDEV 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20199940 20201698 + Bpe018048.1 Bpe05g00632 104409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00632 367 SMART ring_2 312 352 IPR001841 -
Bpe05g00632 367 MobiDBLite consensus disorder prediction 16 38 - -
Bpe05g00632 367 CDD RING-H2_RNF111_like 310 355 - -
Bpe05g00632 367 ProSiteProfiles Zinc finger RING-type profile. 312 353 IPR001841 -
Bpe05g00632 367 MobiDBLite consensus disorder prediction 1 38 - -
Bpe05g00632 367 SUPERFAMILY RING/U-box 308 358 - -
Bpe05g00632 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 360 IPR013083 -
Bpe05g00632 367 Pfam Ring finger domain 311 353 IPR001841 -
Bpe05g00632 367 PANTHER TARGET OF ERK KINASE MPK-1 310 367 - -
Bpe05g00632 367 PANTHER TARGET OF ERK KINASE MPK-1 7 268 - -
Bpe05g00632 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 310 367 - -
Bpe05g00632 367 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00632 Bpe-Chr5:20199940 Bpe10g00999 Bpe-Chr10:15412528 5.03E-101 dispersed
Bpe14g01000 Bpe-Chr14:7388684 Bpe05g00632 Bpe-Chr5:20199940 5.42E-121 wgd
Bpe05g00632 Bpe-Chr5:20199940 Bpe07g00121 Bpe-Chr7:869422 9.16E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00632 - - csv:101209228 463.766