Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00646 ATGCTTCCTTATTTAAGTTTACCAGCGGAATCTTCAAATAAAGAATTGAGAGCATGTTTAAGGGATGGTACTGTTTTATGCAGCATCCTGAACAAATTATGTTCCGGTTCGGTTGAAGGGAAAGGCTCTTTGCAACCTGGTATCACAAATGTGGAAAGCTTTCTGGCAGTTTTAGATGAATTAGGATTGCCAAGCTTTGAAAGATCAGATTTAGAGCAGGGATCGATGGAGCCAGTTCTACAGTGCCTTAGTACTATCAGATCATCATTTGATTTGAACTCTGGGGAAAGAGGTCCCCAAAACCATACAAAGAAAGGATGGGATCTAACTAAGGTAGACTCTTTTGAGGGACATGATGATCCAGGAGGAAATATTTTGACTCATGGGCTACATTCTAGTGAAAATGGGGAAGAGGCGAGAAGAAATTTATTCGAGTCCAGATTTCATGATTCTCAGAGTATTCCTGTTATGTCAGAGATTGCTGGTGATGTTTTCATGCAAAGATTCAATTTTTTTTTGGTACAGAATGCCTCGTTCCAATCACTTTTCAGTATAGTTAATGGAATTCTCAATGACAGCATTGAAAGGAAAAACGGAGATGTATCTCATAGGGTGGCATATTTGTTGAGAAAAGTTATGCAAGTGATTGAACAGCGAATTTCAACCGAAGCAGAAAACTTAAAAAATCAAAACTCTTTTTATCATTCTCGGGAAGAAAAGTATAAATCTAAAATAAGAGTACTTGAAACACTTGCAGTTGGGGCCACAAAAGAAAATGAGGTATTTAGAAAGCTTGAAATTGAAAAGTTCGAAATGGAAGAGAAGAAAAAGCACACGGAGCAGGATTTTTTGGCAGTGAAGAGACAGAAAGATCTTAGTGACATCGAAGTTTTGAGATTAAAAGAGGATTTAGAAAAGACAAAGAAAGCTCATGAAAATTATTGTATGCAATTAGAAGCAGATGCTAATGCAAAGAAAGTTGGTTTGGAGAATAAGTTAAATGAACTTGGTTGCCTTTTGAATGAATCAAGATTGAAGGTCAAAGAATTTGAAACTTTTTCTGAATCCAAGTCAAGTAGGTGGAAAAAGAGAGAGCTCATTTATCAGAGCTTTATAGAGTCTCAGTTTGGAGCCTTACAGAACTTGAGGGTTGTCTTGAAGTCTACAAAACATGAAGTGTTAAAGATGAAACGACGTTACTCGGAGGAACTTAATTACGTGGGGTTGAAGCTTAGAGCATTGATAGATGCTGCTGAAAAATATCATGCAACTCTCATAGAAAATAGAAGATTGTATAACGAAGTCCAAGATTTGAAAGGTAATATTAGAGTACATTGTCGTATAAGACCATTCTTTTCTGGGGAAAATAAGAAGCAAACTACGATAGAATACATTGGGGACAACGGTGAAATAGTAATTACAAACCCATCGAAACCAGGAAAAGACAATCGGAGACTATTCAAGTTCAACAAGGTGTTTGGTCCAACAGCTTCTCAGGAGGAGATATTCATTGAAACTCAACCTTTGATACGGTCTGTTCTTGATGGGTACAACGTTTGCATATTTGCTTATGGACAAACCGGGTCTGGAAAGACTTATACAATGAGTGGCCCAAGTATAGCATCAAAGGAGAAATGGGGAGTCAATAATAGAGCTCTTAATGACCTTTTTGAAATTTCCCAGAGCAGAACAAATTCTATTTTATATGAAGTAGGTGTGCAAATGATTGAGATATATAACGAACAACATGTTTCCTTTAACTTGCGCACACTTGGGATTTGGAATACCTCTCAACCTAATGGGCTGGCTGTTCCTGATGCGTGCATGTATCCTGTTAAATCTACTGCAGATGTCTTGGAGTTAATGGATATTGGGATGACTAATCGAGCTGTTGGTGCCACTGCTCTAAACGAAAGAAGCAGCAGATCTCATAGTGTACTCACAGTTCATGTTCGCGGCGTGGACTTGGAGACAGAGGCTGTCTTACGGGGAAATCTCCATTTGGTGGACCTTGCTGGCAGTGGAAGAGTGGATCGCTCTGAAGCAACCGGAGATAGACTTAAAGAGGCACAACATATAAATAAGTCGCTGTCTGCCCTTGGAGATGTAGTCTTTGCTCTGGCCCAAAAGAACCAACATGTCCCCTACAGAAATAGCAAATTAACTCAAGTCCTTCAAAGTTCTTTAGGTGGTCAGGCAAAAACCCTAATGTTTGTACAGCTTAATCCTGATGTGGATTCCTACTCGGAAACAATAAGCACGTTGAAGTTTGCAGAAAGGGTTTCTGGTGTTGAGTTAGGTGCTGCTCGGAGCAATAAAGAGGGAAGATATGTTAGGGAACTCATGGAGCAGGTGGCAGCCCTCAAGGACACATTGGCAAACAAAGATGCTGAGATAGAGCGACTGCAGCAACTGAAAGCTAATGTCAATGGTCCAAAGCCTGGGCTTAGTTCTCTTCGGCATGGGTCTTCCTCTCCAAGAAGACATTCCATAGGAACACCTCGGCGAAGTGAAAGCCTGGCAGGAAGGAAAGCTTCCGTTTCTGATTTTGATAATTGCTCCGAGTTCAGTGATAAAAATTCTGAATGTGGTTCACATCACTCAGTGGACGACTTTGGACGACACAAGGAATTTTCATCTCAGTTAAATCAAGGAGGGGATGCTGGGCAGAATCCTAACGAAGATGTCGAACTTTTAGGCTTTGGGGAGGATGATTCTGAGGAGAGATTAAGTGATATATCGGATGGTGGTCTTTCGATGGGGACAGAAACAGATGGTTCGATATGCAGCATCGTGGAATATACTCTGTTTCCAGAAGTTTCTAAATCTTCAGAAAATAGAGAAGTTGATGTTAGGCAAGACTGTGAGGCATCAATCAGTGACACACAAACAAACAACAATGGCGTCCAGAATACTACTACTCCTGCAAACAAGTTCTTCTCGGAGAGGTATGCCTTTCTCGGTTCTTCATTGACTATACAGTGCAAAATTGCCGGTTTCCATTATCAGACCAATTAG 3018 40.23 MLPYLSLPAESSNKELRACLRDGTVLCSILNKLCSGSVEGKGSLQPGITNVESFLAVLDELGLPSFERSDLEQGSMEPVLQCLSTIRSSFDLNSGERGPQNHTKKGWDLTKVDSFEGHDDPGGNILTHGLHSSENGEEARRNLFESRFHDSQSIPVMSEIAGDVFMQRFNFFLVQNASFQSLFSIVNGILNDSIERKNGDVSHRVAYLLRKVMQVIEQRISTEAENLKNQNSFYHSREEKYKSKIRVLETLAVGATKENEVFRKLEIEKFEMEEKKKHTEQDFLAVKRQKDLSDIEVLRLKEDLEKTKKAHENYCMQLEADANAKKVGLENKLNELGCLLNESRLKVKEFETFSESKSSRWKKRELIYQSFIESQFGALQNLRVVLKSTKHEVLKMKRRYSEELNYVGLKLRALIDAAEKYHATLIENRRLYNEVQDLKGNIRVHCRIRPFFSGENKKQTTIEYIGDNGEIVITNPSKPGKDNRRLFKFNKVFGPTASQEEIFIETQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPSIASKEKWGVNNRALNDLFEISQSRTNSILYEVGVQMIEIYNEQHVSFNLRTLGIWNTSQPNGLAVPDACMYPVKSTADVLELMDIGMTNRAVGATALNERSSRSHSVLTVHVRGVDLETEAVLRGNLHLVDLAGSGRVDRSEATGDRLKEAQHINKSLSALGDVVFALAQKNQHVPYRNSKLTQVLQSSLGGQAKTLMFVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGRYVRELMEQVAALKDTLANKDAEIERLQQLKANVNGPKPGLSSLRHGSSSPRRHSIGTPRRSESLAGRKASVSDFDNCSEFSDKNSECGSHHSVDDFGRHKEFSSQLNQGGDAGQNPNEDVELLGFGEDDSEERLSDISDGGLSMGTETDGSICSIVEYTLFPEVSKSSENREVDVRQDCEASISDTQTNNNGVQNTTTPANKFFSERYAFLGSSLTIQCKIAGFHYQTN 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20266918 20273180 - Bpe018061.2 Bpe05g00646 104423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00646 1005 PRINTS Kinesin heavy chain signature 634 651 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 PRINTS Kinesin heavy chain signature 516 537 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 PRINTS Kinesin heavy chain signature 665 683 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 PRINTS Kinesin heavy chain signature 714 735 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 SMART kinesin_4 439 772 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 Coils Coil 262 282 - -
Bpe05g00646 1005 Pfam Kinesin motor domain 447 762 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 MobiDBLite consensus disorder prediction 805 844 - -
Bpe05g00646 1005 PANTHER KINESIN-4-LIKE ISOFORM X1 1 957 - -
Bpe05g00646 1005 ProSiteProfiles Calponin homology (CH) domain profile. 1 91 IPR001715 GO:0005515
Bpe05g00646 1005 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 957 - -
Bpe05g00646 1005 ProSiteProfiles Kinesin motor domain profile. 441 764 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bpe05g00646 1005 Pfam Calponin homology (CH) domain 14 88 IPR001715 GO:0005515
Bpe05g00646 1005 Coils Coil 301 321 - -
Bpe05g00646 1005 SUPERFAMILY Calponin-homology domain, CH-domain 14 104 IPR036872 -
Bpe05g00646 1005 Coils Coil 778 808 - -
Bpe05g00646 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 801 IPR027417 -
Bpe05g00646 1005 Gene3D Kinesin motor domain 383 766 IPR036961 -
Bpe05g00646 1005 Gene3D - 2 91 IPR036872 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00646 K10406 KIFC2_3; kinesin family member C2/C3 - jre:109014466 1203.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00646 Bpe11g00603 CCT
Bpe05g00646 Bpe07g00107 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00646 Bpe-Chr5:20266918 Bpe11g00603 Bpe-Chr11:4582905 5.05E-176 dispersed
Bpe13g00050 Bpe-Chr13:1421805 Bpe05g00646 Bpe-Chr5:20266918 0 transposed
Bpe05g00646 Bpe-Chr5:20266918 Bpe07g00107 Bpe-Chr7:763497 2.12E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00646 Bpe_Chr05 FPKM 10.558837 11.837235 14.724505 14.49329 29.362669 31.088842 31.352158 19.736176 19.586544 20.377922