Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00647 ATGGCTTCTGAGCTCCAAAAAGGATTGCCAGAAAACCTTAAAAAACAGCTTGCTCTAGCTGTTAGAAGCATTCAATGGAGCTATGCGATTTTCTGGTCGATTTCAGCTCAACAACCAGGGGTCTTGGAGTGGGGTGATGGATTTTACAATGGAGATATTAAGACGAGAAAAACAGTTCAGGCAAAGGAACTAGACGCCAATCGAATTGTTTTTCAAAGGAGCAAACAATTAAGAGAGCTATACGAGTCTCTTTCTATAGGAGAAGCAAGCCCCCAAGTGAAACGGCCTTCGGCTGCATTATCTCCTGAAGATCTCACCGATGCAGAATGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGACAAGGATTGCCTGGAAGAACGTATATTTCTGGTCAACCCATCTGGCTGTGCAATGCTCATTCTGCAGATAGCAAAGTTTTCAGCCGCTCTCTGCTGGCGAAGGAAAAAATGCTTGATATTTTCCGTTTTACTGTGCAGACAATTATTTGCTTTCCCTTTTTAGATGGTGTGGTGGAGCTAGGAGTAACCGATTTGGTTTTGGAGGACCCTGGCCTCATTCAACACCTTAAAACTTCTTTTTTGGACACGCCATATTCATTGAATTCTTCGACCTTAAAATCGAGAAACGACGAAACTATTATGAGCGTGGCGTTCGATCACAAGATTTTTGAAAGTAAAGAGATCTCAGCTGTAGGATGTGCAGATCTCGATATGACTTCTCCTAGCGATGGTTCAAATCGAATGGAGGGCAATCAACCTGCTGAAGACTCTTTTATCGGTGAAGGGCGGAGTAGAGGAGCTTCTCAAGCTCAAAGCTGGCAGCTGATGGATGATGAGATAAGTAACTGCTTCCATCATTCGATAAATTCTAGCGATTGTATATCTCAAACATTTGTGGAGCCCGAAAAAGTGAACTCCAATCGTGGTGGAGAGATCTTCGACAGAAACAACTTGCCGAATCAAGAGTATCATCACCCGAAACTAACCTCGCGGGACCCGTGGAAGGATGATCTACACTATCAAGGCGTTCTTGCTACCCTTTTCAAGAGCTCGAATCCGTTAATTTTGGGATCACTTGCTCAAAATTGTCGTAAAGATTCTAGCTTTATCGGTTGGAAAAGAGGCCTACCGAATTCACAAATTCCGAGAGTCCCTACCCCACAAATTCGATTAAAGAAGATTTTGTTCGAAGTTCCTCGATTGCTTGCTCTTATTTCCGCTGCCTCTCCCGAGAGTTGTGGTTACAAAGATGAAATTCTGATACAAGAAGTCGATAAAATCGAAAAAAACCATGCATTGTCAGAGAAGAAGCGAAGACATAAACTCAACGAAAGATTTTTTGTTTTAAGATCCATAGTCCCTTCAATTAGCAAGGACGATAAAGTTACCATACTCGATGAAGCAATCGACTATGTGAAGCAGCTCGAACGAAGAGTTAAAGAGTTGGAATCTGAGCGAGAAGTAATGGAATCGGAGGGAAGAATGAGTAGGAAACCTCAAGATGTAGCAGAGAGAACATACGACAACTATGGAAATGATGAAAAACCGAGTAGTAATACGAAGAAATCCCCAATAACCAAGAGGAAGGCTTGTGATGTGATCGAAACGGAGACGGACGAAAGGTTGAACGAGACTATAAACGTGTCTGTGAGCAACAAGAACGTTACAATAAGAATGAGGTGTACTTGGAGAGATGGTATTTTGGTGGATGTCATGGATGTTATAAGCAATTTTCATTTGGAGTCTCATTCAGTTCAGTCATCTACTACAGAAGGGATTCTCTCTCTTATGATCAAGTCAAAGATTAACTCGTCGCCAGCTGCATCGGCTGGGACGATCCAACAAGCTCTCCGGAAGGTTGCTCGGAAATGCTGA 1905 42.52 MASELQKGLPENLKKQLALAVRSIQWSYAIFWSISAQQPGVLEWGDGFYNGDIKTRKTVQAKELDANRIVFQRSKQLRELYESLSIGEASPQVKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTYISGQPIWLCNAHSADSKVFSRSLLAKEKMLDIFRFTVQTIICFPFLDGVVELGVTDLVLEDPGLIQHLKTSFLDTPYSLNSSTLKSRNDETIMSVAFDHKIFESKEISAVGCADLDMTSPSDGSNRMEGNQPAEDSFIGEGRSRGASQAQSWQLMDDEISNCFHHSINSSDCISQTFVEPEKVNSNRGGEIFDRNNLPNQEYHHPKLTSRDPWKDDLHYQGVLATLFKSSNPLILGSLAQNCRKDSSFIGWKRGLPNSQIPRVPTPQIRLKKILFEVPRLLALISAASPESCGYKDEILIQEVDKIEKNHALSEKKRRHKLNERFFVLRSIVPSISKDDKVTILDEAIDYVKQLERRVKELESEREVMESEGRMSRKPQDVAERTYDNYGNDEKPSSNTKKSPITKRKACDVIETETDERLNETINVSVSNKNVTIRMRCTWRDGILVDVMDVISNFHLESHSVQSSTTEGILSLMIKSKINSSPAASAGTIQQALRKVARKC 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20283349 20286402 + Bpe018062.1 Bpe05g00647 104424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00647 634 Coils Coil 475 502 - -
Bpe05g00647 634 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 439 503 IPR036638 GO:0046983
Bpe05g00647 634 PANTHER TRANSCRIPTION FACTOR TT8 6 630 - -
Bpe05g00647 634 Pfam Helix-loop-helix DNA-binding domain 440 486 IPR011598 GO:0046983
Bpe05g00647 634 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 203 IPR025610 -
Bpe05g00647 634 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 436 485 IPR011598 GO:0046983
Bpe05g00647 634 MobiDBLite consensus disorder prediction 251 272 - -
Bpe05g00647 634 MobiDBLite consensus disorder prediction 494 521 - -
Bpe05g00647 634 SMART finulus 442 491 IPR011598 GO:0046983
Bpe05g00647 634 MobiDBLite consensus disorder prediction 494 536 - -
Bpe05g00647 634 MobiDBLite consensus disorder prediction 316 340 - -
Bpe05g00647 634 Gene3D - 436 509 IPR036638 GO:0046983
Bpe05g00647 634 PANTHER TRANSCRIPTION FACTOR EGL1 6 630 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00647 - - - qsu:112035245 724.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00647 Bpe07g00106 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00647 Bpe-Chr5:20283349 Bpe11g00336 Bpe-Chr11:2441302 1.30E-14 dispersed
Bpe11g00211 Bpe-Chr11:1437072 Bpe05g00647 Bpe-Chr5:20283349 1.47E-73 transposed
Bpe05g00647 Bpe-Chr5:20283349 Bpe07g00106 Bpe-Chr7:750204 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g317 Blo02g01111 Blo03g00217 Bda06g00113 Bda08g00368 Bpe05g00647 Bpe07g00106 . . Cmo06g01033 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0782 Cone9ag0786 . . . Cme06g02703 . . Bda07g00480 . . . . Bma12g00073 . . . Cma06g01013 . Car06g00850 . Cpe08g00597 . . . . . . . . . . . . . . . . Csa03g00375 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003574 4 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 1 1 1 1 1 1 1 3 2 2 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21461 PF14215 bHLH-MYC_N 4.10E-50 CL0161 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00647 Bpe_Chr05 FPKM 26.193945 28.407354 15.25913 15.721709 27.105812 31.60673 26.183487 22.108711 23.741705 21.766008