Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00671 ATGGCTGGGAATATTACAGTTTCTCCAACGCCCATGAAAGCCACCTCTAATGGCGTTTTTCAAGGAGATAATCCTCTCCATTATGCTCTACCTCTTCTCATACTGCAGATATGTCTTCTTGTTATTTTCACTCGTCTTCTTGCTTTTCTTTTTCGTCCTTTGAGACAGCCTCGTGGTATTGCTGAGATTGTTGGGGGAATATTACTTGGTCCATCAGTTCTGGGTCGGAACAAAGACTATCTGAACACAATTTTTCCGGCGAGAAGCCTGACAGTCTTGGACACTTTGGTCACTCTTGCCCTCCTGGTCTTCCTCTTTCTCGTAGGCTTAGAGTTGGACCCGAAATCTCTCCGGCGAACCGGAAAAAAAGCTTTAAACATAGCAGCAGCAGGGATTAGCCTTCCGTTTCTTCTCGGAATCTGA 423 45.39 MAGNITVSPTPMKATSNGVFQGDNPLHYALPLLILQICLLVIFTRLLAFLFRPLRQPRGIAEIVGGILLGPSVLGRNKDYLNTIFPARSLTVLDTLVTLALLVFLFLVGLELDPKSLRRTGKKALNIAAAGISLPFLLGI 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20394859 20395569 - Bpe018084.1 Bpe05g00671 104448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00671 140 Pfam Sodium/hydrogen exchanger family 39 139 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bpe05g00671 140 Gene3D - 32 140 IPR038770 -
Bpe05g00671 140 PANTHER CATION/H + ANTIPORTER 8 140 - -
Bpe05g00671 140 PANTHER CATION/H(+) ANTIPORTER 17 8 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00671 - - - fve:101299764 194.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00671 Bpe-Chr5:20394859 Bpe04g00795 Bpe-Chr4:5190426 7.12E-56 dispersed
Bpe05g00671 Bpe-Chr5:20394859 Bpe07g00084 Bpe-Chr7:622519 7.44E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g76 . . . . Bpe05g00671 . . . . Cmo16g00619 . . . . . . . . . . . . . . Cla07g00721 Cam07g0776 Cec07g0839 Cco07g0814 Clacu07g0761 Cmu07g0768 Cre07g1119 . . . . . . . Cme07g01597 . . . . . . . . . . . . Cma16g00568 . . . . . . . . . . . . . . . . . . . Csa04g00627 Chy07g01186 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00238 . 11 811 Antiporter Super Family AT2G13620 73.3 0.0e+00 1184.9
Bpe02g01948 . 10 792 Antiporter Super Family AT2G13620 71.7 0.0e+00 1113.2
Bpe05g00671 . 11 139 Antiporter Super Family AT2G13620 56.6 3.2e-36 150.6
Bpe02g00838 . 76 824 Antiporter Super Family AT3G53720 70.1 1.8e-296 1015.0
Bpe04g00795 . 84 765 Antiporter Super Family AT3G53720 50.7 3.3e-189 658.7
Bpe07g00084 . 858 1560 Antiporter Super Family AT3G53720 50.7 1.6e-186 649.8
Bpe07g00084 . 1 778 Antiporter Super Family AT5G41610 69.6 1.5e-301 1031.9
Bpe04g00795 . 7 765 Antiporter Super Family AT5G41610 64.9 3.9e-281 964.1
Bpe11g00238 . 11 797 Antiporter Super Family AT5G41610 50.6 2.2e-215 745.7
Bpe02g00838 . 1 801 Antiporter Super Family AT5G41610 51.7 5.0e-212 734.6
Bpe05g00671 . 1 140 Antiporter Super Family AT5G41610 68.1 5.1e-47 186.4
Bpe07g00084 . 1 803 Antiporter Super Family AT4G23700 66.1 1.3e-295 1012.3
Bpe04g00795 . 7 764 Antiporter Super Family AT4G23700 62.2 1.4e-270 929.1
Bpe05g00671 . 1 140 Antiporter Super Family AT4G23700 73.6 3.5e-51 200.3
Bpe04g00795 . 4 779 Antiporter Super Family AT3G17630 71.8 0.0e+00 1079.7
Bpe07g00084 . 780 1555 Antiporter Super Family AT3G17630 63.4 3.1e-270 927.9
Bpe11g00238 . 8 793 Antiporter Super Family AT3G17630 50.8 2.0e-221 765.8
Bpe02g00838 . 8 803 Antiporter Super Family AT3G17630 51.5 4.4e-208 721.5
Bpe05g00671 . 9 140 Antiporter Super Family AT3G17630 68.9 2.3e-44 177.6
Bpe07g00084 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.7e-229 792.0
Bpe04g00795 . 6 764 Antiporter Super Family AT1G64170 55.5 5.0e-228 787.7
Bpe05g00671 . 12 140 Antiporter Super Family AT1G64170 72.1 1.1e-44 178.7
Bpe11g00238 . 11 811 Antiporter Super Family AT2G13620 73.3 0.0e+00 1184.9
Bpe02g01948 . 10 792 Antiporter Super Family AT2G13620 71.7 0.0e+00 1113.2
Bpe05g00671 . 11 139 Antiporter Super Family AT2G13620 56.6 3.2e-36 150.6
Bpe07g00084 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.7e-229 792.0
Bpe04g00795 . 6 764 Antiporter Super Family AT1G64170 55.5 5.0e-228 787.7
Bpe05g00671 . 12 140 Antiporter Super Family AT1G64170 72.1 1.1e-44 178.7
Bpe07g00084 . 1 803 Antiporter Super Family AT4G23700 66.1 1.3e-295 1012.3
Bpe04g00795 . 7 764 Antiporter Super Family AT4G23700 62.2 1.4e-270 929.1
Bpe05g00671 . 1 140 Antiporter Super Family AT4G23700 73.6 3.5e-51 200.3
Bpe07g00084 . 1 778 Antiporter Super Family AT5G41610 69.6 1.5e-301 1031.9
Bpe04g00795 . 7 765 Antiporter Super Family AT5G41610 64.9 3.9e-281 964.1
Bpe11g00238 . 11 797 Antiporter Super Family AT5G41610 50.6 2.2e-215 745.7
Bpe02g00838 . 1 801 Antiporter Super Family AT5G41610 51.7 5.0e-212 734.6
Bpe05g00671 . 1 140 Antiporter Super Family AT5G41610 68.1 5.1e-47 186.4
Bpe04g00795 . 4 779 Antiporter Super Family AT3G17630 71.8 0.0e+00 1079.7
Bpe07g00084 . 780 1555 Antiporter Super Family AT3G17630 63.4 3.1e-270 927.9
Bpe11g00238 . 8 793 Antiporter Super Family AT3G17630 50.8 2.0e-221 765.8
Bpe02g00838 . 8 803 Antiporter Super Family AT3G17630 51.5 4.4e-208 721.5
Bpe05g00671 . 9 140 Antiporter Super Family AT3G17630 68.9 2.3e-44 177.6
Bpe02g00838 . 76 824 Antiporter Super Family AT3G53720 70.1 1.8e-296 1015.0
Bpe04g00795 . 84 765 Antiporter Super Family AT3G53720 50.7 3.3e-189 658.7
Bpe07g00084 . 858 1560 Antiporter Super Family AT3G53720 50.7 1.6e-186 649.8
Bpe10g00541 . 24 804 Antiporter Super Family AT3G52080 52.9 2.7e-234 808.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017363 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 1 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00671 Bpe_Chr05 FPKM 1.514367 1.79187 2.08403 1.957169 2.095802 2.128354 1.731506 1.529634 2.200532 2.262214