Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00675 ATGAACGACGCTGATGTATCCAAGCAGATCCAGCAGATGGTGAGGTTTATCCGGCAGGAAGCGGAGGAAAAGGCGAATGAAATCTCCGTCTCTGCGGAAAAAAAGCCGGCTTTATTGTTGCGATGTCGCCAAGACGACCTTCATTTAGTTGAGGATGTGCTACAACCTGCAGCAGATGAATATGCTAAAAAAGCAAATGTTCATCCTCCAGAAATTATAGTCGACACTCGGGTGTTTCTACCACCTGCTCTGAGCCATCACAATGCTCATGGTCCATTTTGGTATACTTATTCCCAACATTGGGAGTTCCATTATTTTCCCTGA 324 45.37 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEKKPALLLRCRQDDLHLVEDVLQPAADEYAKKANVHPPEIIVDTRVFLPPALSHHNAHGPFWYTYSQHWEFHYFP 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20422414 20424136 - Bpe018088.1 Bpe05g00675 104452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00675 107 Gene3D - 1 33 - -
Bpe05g00675 107 Gene3D - 34 89 IPR038495 -
Bpe05g00675 107 Pfam ATP synthase (E/31 kDa) subunit 35 80 IPR002842 GO:0033178|GO:0046961|GO:1902600
Bpe05g00675 107 PANTHER ARCHAEAL/VACUOLAR-TYPE H+-ATPASE SUBUNIT E 1 34 - -
Bpe05g00675 107 PANTHER ARCHAEAL/VACUOLAR-TYPE H+-ATPASE SUBUNIT E 34 93 - -
Bpe05g00675 107 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 1 34 IPR002842 GO:0033178|GO:0046961|GO:1902600
Bpe05g00675 107 PANTHER ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED 34 93 IPR002842 GO:0033178|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00675 K02150 ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E - csin:114272320 113.62
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00675 Bpe07g00081 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00675 Bpe-Chr5:20422414 Bpe07g00081 Bpe-Chr7:597875 7.05E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g94 Blo02g01135 Blo03g00240 Bda06g00135 Bda08g00489 Bpe05g00675 Bpe07g00081 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0260 Cone12ag0266 . . . . . . . . . . . . Bma05g00848 Bma12g00600 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021558 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00675 Bpe_Chr05 FPKM 9.761905 8.823295 8.583449 8.993658 11.857397 15.044857 9.777303 6.498846 6.904288 7.965858