Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00677 ATGGCGTCGAAGCGGATCTTGAAGGAGCTCAAAGATCTTCAAAAGGATCCTCCTACCTCATGTAGCGCAGGCCCAGTTGCGGAAGACATGTTCCATTGGCAAGCAACGATCATGGGTCCACCTGACAGTCCCTATGCAGGTGGAGTGTTCCTTGTTACTATTCATTTTCCTCCGGACTATCCATTTAAACCACCGAAGATTAGAGTGCAAGGCGGGTTTTTTTTATATGTAATCTCATTCTTTATTGTCTTTTCTGTAGCATTCAGGACCAAGGTTTTTCATCCCAATATTAACAGCAATGGTAGCATCTGTCTTGATATACTGAAGGAACAATGGAGTCCTGCACTCACCATTTCCAAGGTTTTGCTGTCAATCTGTTCACTATTAACAGACCCAAATCCTGATGATCCGTTGGTGCCAGAGATCGCCCACATGTACAAAACAGACAGGAACAAGTATGAAACAACAGCTAGAAGCTGGACCCAGAAGTATGCAATGGGTTGA 504 44.25 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKIRVQGGFFLYVISFFIVFSVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20428798 20431018 + Bpe018090.1 Bpe05g00677 104454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00677 167 Pfam Ubiquitin-conjugating enzyme 5 160 IPR000608 -
Bpe05g00677 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 166 IPR000608 -
Bpe05g00677 167 PANTHER BNAA01G32320D PROTEIN 3 68 - -
Bpe05g00677 167 PANTHER BNAA01G32320D PROTEIN 72 164 - -
Bpe05g00677 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 68 - -
Bpe05g00677 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 72 164 - -
Bpe05g00677 167 SMART ubc_7 4 166 - -
Bpe05g00677 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 93 108 IPR023313 -
Bpe05g00677 167 CDD UBCc 3 161 IPR000608 -
Bpe05g00677 167 SUPERFAMILY UBC-like 2 166 IPR016135 -
Bpe05g00677 167 Gene3D Ubiquitin Conjugating Enzyme 1 167 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00677 - - K06689 egr:104424465 302.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00677 Bpe-Chr5:20428798 Bpe12g00368 Bpe-Chr12:8943900 8.22E-106 dispersed
Bpe13g00971 Bpe-Chr13:15529823 Bpe05g00677 Bpe-Chr5:20428798 3.77E-99 wgd
Bpe05g00677 Bpe-Chr5:20428798 Bpe05g01018 Bpe-Chr5:22834013 2.78E-106 wgd
Bpe05g00677 Bpe-Chr5:20428798 Bpe07g01004 Bpe-Chr7:15717423 8.22E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00677 Bpe_Chr05 FPKM 4.898993 5.654668 2.361347 2.213958 0.616579 0.448779 0.3669 3.267089 2.693395 3.343804