Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00690 ATGAACACAGAAGAGGTCGAGAATGATAAATGCGATATGGAAATCGATGGATTTGTGCAGAATCAAGGGAAAGTACTCTCCAATGGATTCAACGTCGACTATCTCAAAGTTTACTACGCAAAACTTTTTCCACATGCTGATATTTTCAAATGGATGTCATATGGAAATGATGGGAAGCATCCGGCTTGCGATCAATCCTATTGTGGTAGAAGAGAATTTTCGTTTACACTGGAAAATGATATTTATGTGCGGTTTCAGTCTTTTCAGAGTTTGTCTGCGATGGAAAGTTCTATAAAAGAGAAGTGCCCTTTCAAAATAGATATTGGGCCTGTATACAGTGTGGATCCATCAAAAAGACATGCGTATGCACAAAGTGGTGATAATGTCTTTACTCCCGTAGAGAGAGAGTTGGTTTTTGATGTCGACATGACAGATTATGATGATGTTAGATACTGTTGTTCAGGAGCTGATGTTTGCTTGGACTGCTGGCCGCTAATGACTGCTGCTATCAAAGTTATAGATACTGTCCTCAGAGATGATTTTGGGTTCAATCACATCTTGTGGGTATATAGTGGTAGACGTGGGGTTCATTGTTGGGTTTGTGATGGGAAAGCAAGAAGGTTATCTAATGAACAGAGGGCAGCTATTGCTGACTATTTTCACTTGTACCGGGGCAATGAAAACAGTCATAAGAAGGTTTCTTTGGGTGGTCAAGGTCTTCATCCGTTTCTTGCGAGATCATATAAGGAAGTTCTCAAGGACATTTTCGAGAAAAAATTGCTCTTGAGTCAAAAAATCTTCTCCACAGATGAGAGATATGAGAAGATCTTGGAAATGATTTCTGACGAGTCCGTTGCCTCAGAGATTCGAGGGAGGTGGCAAGAGAATAAGCGATCATCCTCTTCCAAAGATGACATAAATGTCATACGATGGGAGCAGCTAAAGAAGGTGCTGCAATCGGGGAAACATAAGACGCAAGGAATTCGAAGGTGTGTAGAGGAAATAGTTTTTTCTTTTACCTACCCGAGGCTGGACATGGAGGTTACAAAACACATGAACCATCTGTTGAAGGCACCATTTTGTGTTCATCCAAAAACAGGTCATGTATGTGTTCCGATTGATCCAGAAAATTGCGATGAATTTGATCCTACTACTGTCCCAACTCTTTCTCAGGTAAACACTAAATATATTGGCAATTTTGGAGCAACTGTTTTAGTGATTTCTGGTGAAATTGAATTAGATGGAACCTCCCTTGGGAGATCATTGAGGTTCTTCAGATCTTCATTCTTGCAACCTCTTCTAAAATCGTGCAAGGAGGAAATGGAAAGTCATTATAGCTCCAAATTGCAGCAGACGAACTCCTTGAGCTGGTAG 1374 40.61 MNTEEVENDKCDMEIDGFVQNQGKVLSNGFNVDYLKVYYAKLFPHADIFKWMSYGNDGKHPACDQSYCGRREFSFTLENDIYVRFQSFQSLSAMESSIKEKCPFKIDIGPVYSVDPSKRHAYAQSGDNVFTPVERELVFDVDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTVLRDDFGFNHILWVYSGRRGVHCWVCDGKARRLSNEQRAAIADYFHLYRGNENSHKKVSLGGQGLHPFLARSYKEVLKDIFEKKLLLSQKIFSTDERYEKILEMISDESVASEIRGRWQENKRSSSSKDDINVIRWEQLKKVLQSGKHKTQGIRRCVEEIVFSFTYPRLDMEVTKHMNHLLKAPFCVHPKTGHVCVPIDPENCDEFDPTTVPTLSQVNTKYIGNFGATVLVISGEIELDGTSLGRSLRFFRSSFLQPLLKSCKEEMESHYSSKLQQTNSLSW 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20517367 20521316 + Bpe018103.1 Bpe05g00690 104467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00690 457 CDD AE_Prim_S 44 383 IPR014052 GO:0003896|GO:0006269
Bpe05g00690 457 SUPERFAMILY Prim-pol domain 31 396 - -
Bpe05g00690 457 Pfam DNA primase small subunit 139 374 IPR002755 GO:0003896|GO:0006269
Bpe05g00690 457 PANTHER DNA PRIMASE SMALL SUBUNIT 41 457 IPR014052 GO:0003896|GO:0006269
Bpe05g00690 457 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 36 394 IPR014052 GO:0003896|GO:0006269
Bpe05g00690 457 Gene3D DNA primase, PRIM domain 22 439 - -
Bpe05g00690 457 PANTHER DNA PRIMASE 41 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00690 K02684 PRI1; DNA primase small subunit [EC:2.7.7.102] - vvi:100260326 718.383
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g125 . . . Bda08g00470 Bpe05g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0848 Cone9ag0846 . . . . . . . . . . Bma05g00872 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007924 1 1 0 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 1 1 1 1 1 2 2 1 2 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00690 Bpe_Chr05 FPKM 45.682827 50.090153 31.987253 31.985058 21.595337 22.660715 20.089739 39.30138 38.791199 36.390347