Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00706 ATGGGTTTTCCTCAAACTCCAAATGCTCCTCGCCTCTACCCTCAAGCACTCCAGCTCAAACTCTACCAGGCCTTCATTTTCTCCATCCCTATTCTCTTCTCCATCATTCTCTTCCTGTTGTTCTACCTCTTCTACCTCAAGAGGAGAGCTTCTTCTCTTTCCTCTTCTCCTCCAATCCTTCCGACCAGCACTAATCATGCTCCGATGACTCATTATATTGCTCCGGTGGGTTTGAAAGGTGATCTAATAGAGAAGCTTCCCAAAGTAATATTTGAAGAGGAATTCAGGGCCAGAGACTCGCTATGTTGTGTTTGCTTGGGAGAATATGAACTGAAGGAGGAGCTGGTTCAGGTCCCATCGTGCAGGCACATGTTTCATATGGAATGTATAGTTCACTGGCTCCACTCAAACGCCACTTGTCCACTATGTAGATCCCCTGTTCTTCCCACTACAGCTAAACCCTCCAATCTCCGACCGCCACCTGCTTCCTCCGGCGACCCATTAGATCCTTCTGTCTTGTCTCACGATTATAGTATC 537 47.3 MGFPQTPNAPRLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSPPILPTSTNHAPMTHYIAPVGLKGDLIEKLPKVIFEEEFRARDSLCCVCLGEYELKEELVQVPSCRHMFHMECIVHWLHSNATCPLCRSPVLPTTAKPSNLRPPPASSGDPLDPSVLSHDYSI 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20634286 20635532 - Bpe025824 Bpe05g00706 104483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00706 179 SUPERFAMILY RING/U-box 82 151 - -
Bpe05g00706 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 149 IPR013083 -
Bpe05g00706 179 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 18 152 - -
Bpe05g00706 179 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Bpe05g00706 179 Pfam Ring finger domain 102 144 IPR001841 -
Bpe05g00706 179 SMART ring_2 102 143 IPR001841 -
Bpe05g00706 179 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 18 152 - -
Bpe05g00706 179 MobiDBLite consensus disorder prediction 153 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00706 K19039 ATL7_58_59; E3 ubiquitin-protein ligase ATL7/58/59 [EC:2.3.2.27] - egr:104441678 192.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00706 Bpe-Chr5:20634286 Bpe02g00697 Bpe-Chr2:4718331 4.23E-18 dispersed
Bpe05g00706 Bpe-Chr5:20634286 Bpe11g01365 Bpe-Chr11:10219330 1.25E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g177 Blo02g01161 Blo03g00259 . Bda08g00456 Bpe05g00706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g00928 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010674 2 1 1 0 1 1 1 0 1 0 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00706 Bpe_Chr05 FPKM 7.179297 7.318339 3.684134 3.488976 6.030327 6.120192 5.940896 2.669685 2.922863 2.940588