Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00710 ATGCCGGGTTTAGTTTCAGTCAAAACTCCGCCTGAAGCTCCACCTCTCCGGATCTCCGTCCCGAACACTCCGACTCAGATCCAGAGATCGGATCCTGCTAACAGCAAGCCTCCATCTCCCCTAGCCAGAAAACAAATCTCCCCATCTCCTTCCCGATCCAAGCCGTCGCCGGATCGGAAGAAGAAGCCACAACCCGAAAGCCCAGTCCCCAGCCCCGCCCTACCTGATTCCTCCCTCGACAATCCGGATCTCGGACCCTTCCTACTCAAGCTCGCCCGCGACACTATCGCTTCAGGGGAAGGCCCGAACAAAGCACTAGACTACGCGATCAGGGCCTCCAAATCGTTCGAGCGATGCGCGACCGAAGAAGAGCCGAGCCTCGACCTGGCTATGAGCCTGCACGTTCTGGCAGCCATTTACTGTAGCTTGGGCAGATTCGAGGAGGCGGTTCCGGTTCTGGAGCAGGCAATTCGAGTCCCGATTGTTTCTCGTGGCCCAGATCATGCATTGGCTGGATTCTCTGGGTATATGCAATTAGGAGATACATATTCTATGCTTGGTCAAATTGAGCGCTCGATCGCTTGCTATGAGAATGGATTGAAGATTCAGATCGAGGCACTGGGAGACACGGATCCTAGGGTGGGAGAGACTTGCAGGTACTTATCTGAGGCCCATGTTCAAGCAATGCAGTTCGACAGAGCAGAAGAGTTGTGCAAGAAAACACTCGAAATTCATCGAGCACACAGTGAGCCAGCATCCCTTGAAGAGGCAGCCGATCGACGCCTTATGGCCCTTATATCTGAAGCAAAAGGAGACTACGAGACAGCACTCGAGCACCTCGTCCTGGCCAGCATGGCAATGATTTCCAATGGACAAGACAATGAAGTTGCTGCCATTGATGTCAGCATCGGAAACATTTACATGTCTCTCTGTCGCTTTGATGAGGCTGTCTTTTCCTACCAGAAGGCTCTAACTGTCTTCAAAGCATCGAAAGGCGATAACCACCCTTCAGTTGCCTCCGTTTTCATCCGCCTTGCCGATATATATCAGAAGACTGGAAAGCTTCGAGAATCGAAATCATATTGTGAAAATGCTTTGAGGATTTATTCCAAGCCAGTGCCTGGAACTACGGCTGAAGAAATTGCCTGTGGGTTGACTGAAATATCGGCTATTTATGAGTCTGTCGATGAGCCCAATGAGGCATTGAAGCTTTTGCAAAAGGCGATGAAGCTGTTAGAGGATAAACCGGGACAGCAAAGCACGATTGCTGGGATTGAAGCTCGGATGGGAGTAATGTTTTACATGGTTGGGAGGTATGAAGATGCAAGGAACACTTTTGAGAGCTCCATAGCAAAACTCAGAGCCAGTGGGGAGAGAAAATCAGCCTTCTTTGGGGTTGTGTTAAATCAAATGGGATTGGCTTCTGTGCAGCTTTTCAAGATAGATGAAGCTGCCGAGCTTTTTGAAGAAGCGAGGGGAATACTGGAACAAGAGTGTGGGCCCTGTCATCAGGACACTCTTGGAGTTTACAGCAATCTTGCAGCCACCTATGATGCTATGGGGAGGGTAGAGGACGCAATCGAAATACTGGAGCATGTTCTTAAATTGAGAGAAGAAAAGCTTGGAATTGCAAATCCAGATTTCGAAGATGAGAAGAGAAGGTTAGAAGAGCTGCTGAAGGAAGCAGGCAGAACCAGAGACAGAAAAGCAAAATCCCTCGAAAACCTCATCGACCCAAACTCGAAGAAGACGACAAAGAAAGAGGTAACAAAGAAGTGGTCTGGCTTAGGCTTTAGAATTTGA 1803 49.36 MPGLVSVKTPPEAPPLRISVPNTPTQIQRSDPANSKPPSPLARKQISPSPSRSKPSPDRKKKPQPESPVPSPALPDSSLDNPDLGPFLLKLARDTIASGEGPNKALDYAIRASKSFERCATEEEPSLDLAMSLHVLAAIYCSLGRFEEAVPVLEQAIRVPIVSRGPDHALAGFSGYMQLGDTYSMLGQIERSIACYENGLKIQIEALGDTDPRVGETCRYLSEAHVQAMQFDRAEELCKKTLEIHRAHSEPASLEEAADRRLMALISEAKGDYETALEHLVLASMAMISNGQDNEVAAIDVSIGNIYMSLCRFDEAVFSYQKALTVFKASKGDNHPSVASVFIRLADIYQKTGKLRESKSYCENALRIYSKPVPGTTAEEIACGLTEISAIYESVDEPNEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYMVGRYEDARNTFESSIAKLRASGERKSAFFGVVLNQMGLASVQLFKIDEAAELFEEARGILEQECGPCHQDTLGVYSNLAATYDAMGRVEDAIEILEHVLKLREEKLGIANPDFEDEKRRLEELLKEAGRTRDRKAKSLENLIDPNSKKTTKKEVTKKWSGLGFRI 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20662245 20665189 - Bpe018123.1 Bpe05g00710 104487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00710 600 Gene3D Tetratricopeptide repeat domain 174 284 IPR011990 GO:0005515
Bpe05g00710 600 Coils Coil 545 568 - -
Bpe05g00710 600 Gene3D Tetratricopeptide repeat domain 466 586 IPR011990 GO:0005515
Bpe05g00710 600 SMART tpr_5 215 248 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 465 498 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 507 540 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 130 163 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 423 456 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 297 330 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 257 290 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 382 415 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 339 372 IPR019734 GO:0005515
Bpe05g00710 600 SMART tpr_5 173 206 IPR019734 GO:0005515
Bpe05g00710 600 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Bpe05g00710 600 SUPERFAMILY TPR-like 382 538 IPR011990 GO:0005515
Bpe05g00710 600 Gene3D Tetratricopeptide repeat domain 80 173 IPR011990 GO:0005515
Bpe05g00710 600 Gene3D Tetratricopeptide repeat domain 285 465 IPR011990 GO:0005515
Bpe05g00710 600 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 599 - -
Bpe05g00710 600 MobiDBLite consensus disorder prediction 1 82 - -
Bpe05g00710 600 PANTHER - 1 599 - -
Bpe05g00710 600 MobiDBLite consensus disorder prediction 19 53 - -
Bpe05g00710 600 ProSiteProfiles TPR repeat profile. 507 540 IPR019734 GO:0005515
Bpe05g00710 600 Pfam Tetratricopeptide repeat 296 370 - -
Bpe05g00710 600 Pfam Tetratricopeptide repeat 467 539 - -
Bpe05g00710 600 SUPERFAMILY TPR-like 176 537 IPR011990 GO:0005515
Bpe05g00710 600 SUPERFAMILY TPR-like 104 202 IPR011990 GO:0005515
Bpe05g00710 600 Pfam MalT-like TPR region 134 283 IPR041617 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00710 - - - csv:101207194 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00954 Bpe-Chr4:6437693 Bpe05g00710 Bpe-Chr5:20662245 0 dispersed
Bpe05g00710 Bpe-Chr5:20662245 Bpe13g00222 Bpe-Chr13:10243762 0 dispersed
Bpe05g00710 Bpe-Chr5:20662245 Bpe07g00835 Bpe-Chr7:14559854 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00710 Bpe_Chr05 FPKM 3.818792 3.638382 0.0 0.0 3.103951 3.693205 2.612604 0.0 0.0 0.0