Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00711 ATGGCGAATCATTCCATTAACATGCCCCAAGAAGAAGGGATCACGCTTCGTCGAAACTTATCAAGAAGGCGTTCCTTTCGATTTGAGGTCGTTGACAGGGATGACAGAGGATGGACGGTTCTTCACATTGGTGCCCGAAAGGGTAATGTCAAAGAGGTGAAACGACTTCTTGATGAAGGAATGAACGTGAATGTGATAACATGGGGCCCCAAATCAAAAGGGGCGACTCCTCTACACCTTGCTGCCGAGGGAGGCCACCTTAAAGTTATGGATGTACTGCTCGAACGAGGTGCTGACATTGATGCTAGAACCAAGGGTGCCTGTGGTTGGACACCGCTTCATAACGCAGCTAAAGAAAGGAGGAGAGAAGCCGTGAAATTCCTGATAGAGAATGGGGCATTCCTGCCAGATGATATAAATGATTGCAGATTCAATCCACCACTCCATTACTGTCCTGGTCTTGAGTGGGCTTATGAGGAGATGAAACGCCTCCAACAAGAGAGCTTATCGGCTGAGGAAACATCTTACAGCTCTGATAGCTAA 543 47.7 MANHSINMPQEEGITLRRNLSRRRSFRFEVVDRDDRGWTVLHIGARKGNVKEVKRLLDEGMNVNVITWGPKSKGATPLHLAAEGGHLKVMDVLLERGADIDARTKGACGWTPLHNAAKERRREAVKFLIENGAFLPDDINDCRFNPPLHYCPGLEWAYEEMKRLQQESLSAEETSYSSDS 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20668337 20669572 - Bpe018124.1 Bpe05g00711 104488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00711 180 PRINTS Ankyrin repeat signature 89 103 IPR002110 GO:0005515
Bpe05g00711 180 PRINTS Ankyrin repeat signature 37 52 IPR002110 GO:0005515
Bpe05g00711 180 Coils Coil 154 174 - -
Bpe05g00711 180 Pfam Ankyrin repeats (many copies) 76 129 IPR002110 GO:0005515
Bpe05g00711 180 SMART ANK_2a 36 65 IPR002110 GO:0005515
Bpe05g00711 180 SMART ANK_2a 73 102 IPR002110 GO:0005515
Bpe05g00711 180 SMART ANK_2a 108 141 IPR002110 GO:0005515
Bpe05g00711 180 Gene3D - 17 164 IPR036770 -
Bpe05g00711 180 ProSiteProfiles Ankyrin repeat profile. 108 133 IPR002110 GO:0005515
Bpe05g00711 180 Pfam Ankyrin repeat 37 65 IPR002110 GO:0005515
Bpe05g00711 180 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Bpe05g00711 180 ProSiteProfiles Ankyrin repeat region circular profile. 108 133 - -
Bpe05g00711 180 ProSiteProfiles Ankyrin repeat region circular profile. 36 65 - -
Bpe05g00711 180 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 12 179 - -
Bpe05g00711 180 ProSiteProfiles Ankyrin repeat profile. 36 68 IPR002110 GO:0005515
Bpe05g00711 180 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 12 179 - -
Bpe05g00711 180 SUPERFAMILY Ankyrin repeat 33 151 IPR036770 -
Bpe05g00711 180 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00711 - - - csv:101206715 295.819
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00711 Bpe07g00055 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00711 Bpe-Chr5:20668337 Bpe10g00893 Bpe-Chr10:14653522 1.74E-10 dispersed
Bpe05g00711 Bpe-Chr5:20668337 Bpe07g01021 Bpe-Chr7:15804644 5.76E-13 wgd
Bpe05g00711 Bpe-Chr5:20668337 Bpe07g00055 Bpe-Chr7:455035 2.49E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g916 Blo02g01165 . . Bda08g00449 Bpe05g00711 Bpe07g00055 . . . Cmo16g00572 . . . . . Cpe14g00444 . . . . . . . . . . . . . . . . . Cone6ag0873 Cone9ag0879 . . . . . . . . . . Bma05g00893 . . . . . Cma16g00523 . . Cpe01g00525 . . . . . . . . . . . . . . . . Csa04g00688 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005963 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00711 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.502673 0.0 0.435535 0.0 0.0 0.0