Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00728 ATGGAAGGCGTACCCCACCCTATACCTCGAACAGTTGAGGAAGTTTTCAGTGACTTCAAAGGCAGACGTTCTGGCTTGATCAAAGCTCTCACCACTGATGTTGAGAAATTCTTTCAACAGTGCGATCCTGACAGTTTTGGTGTTCTGCTTACAGAGAAGGAAAATTTGTGTCTCTATGGACTTCCAAATGAGACATGGGAAGTCAATCTGCCAGTAGAGGAGGTACCTCCGGAGCTTCCGGAACCAGCATTGGGCATAAACTTTGCTAGGGATGGTATGCAGGAGAAGGATTGGCTGTCATTGGTTGCTGTACACAGTGATTCATGGTTGCTAGCTGTTGCATTTTATTTTGGTGCACGCTTCGGGTTTGGTAAGAATGAAAGGAAGAGACTTTTCCAGATGATAAATGATCTACCAACTATATTTGAAGTGGTGACAGGGAATGTTAAGCATCCAAAGGAGCAGTCAGCTACTCATAATAACAGCAGCAAAAGCAAATCAAGTGGGAAAATGCAATCTCGCCAATCTGAGCCACAGAACAAGGGAGTAAAGATGTCTCCACTCCCCAAAGAAGATGACGACAGTGGGGAGGAGGAAGAAGATGATGAGCAGGGAGCGACATGTGGTGCGTGTGGAGATAACTACGGAAATGATGAGTTTTGGATTTGTTGCGATATTTGTGAAAGATGGTTCCACGGGAAATGCGTTAAGATTACTCCTGCAAAGGCAGAGCATATCAAGCAGTACAAGTGCCCAAGTTGCAGTAACAAGCGGGCTAGAGTTTGA 786 45.17 MEGVPHPIPRTVEEVFSDFKGRRSGLIKALTTDVEKFFQQCDPDSFGVLLTEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGNVKHPKEQSATHNNSSKSKSSGKMQSRQSEPQNKGVKMSPLPKEDDDSGEEEEDDEQGATCGACGDNYGNDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20777447 20781954 + Bpe018141.1 Bpe05g00728 104505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00728 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Bpe05g00728 261 SMART PHD_3 207 255 IPR001965 -
Bpe05g00728 261 Pfam Alfin 11 147 IPR021998 GO:0006355|GO:0042393
Bpe05g00728 261 PANTHER CPG BINDING PROTEIN 1 261 IPR045104 GO:0006355|GO:0042393
Bpe05g00728 261 MobiDBLite consensus disorder prediction 150 207 - -
Bpe05g00728 261 SUPERFAMILY FYVE/PHD zinc finger 197 258 IPR011011 -
Bpe05g00728 261 MobiDBLite consensus disorder prediction 151 182 - -
Bpe05g00728 261 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 1 261 - -
Bpe05g00728 261 MobiDBLite consensus disorder prediction 192 206 - -
Bpe05g00728 261 CDD PHD_AL_plant 208 257 IPR044104 -
Bpe05g00728 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 256 IPR013083 -
Bpe05g00728 261 Pfam PHD-finger 208 257 IPR019787 -
Bpe05g00728 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00604 Bpe-Chr1:3979265 Bpe05g00728 Bpe-Chr5:20777447 6.93E-43 dispersed
Bpe05g00728 Bpe-Chr5:20777447 Bpe14g00276 Bpe-Chr14:2783384 1.04E-110 dispersed
Bpe05g00728 Bpe-Chr5:20777447 Bpe02g02185 Bpe-Chr2:23047068 1.09E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21470 PF12165 Alfin 8.10E-66 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00728 - - jre:109018723 456.062