Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00749 ATGTCTAAGAAGCCATCCGAGCCGGACCTTGAAGTTGCATCATCCATGGCGTTTTTCGAAGTTTGTAAGAAGTTGAAGCGCTTCATATTGTTCGAACCCTATGTTGGGTTTCTTGGATTCTTCTTCATTTCATGCTGCGTTATTTCCTGCTTCGTTTACATGGATAGTAGCATTTTGGGAAATAGCTTTGTAATGTCATACCAACCGGAGAGCTACGCTTGGTTGCAGAGAAACGGGTCGGGTCAGACTCAGAAAATGGACTTTCTTGAAGAACAGAGCAGCGGTTGCGACTTGTTTGATGGCGACTGGGTTTGGGATGAGACTTACCCCTTATACGATTCTGCCGATTGCCCATTTCTGGATAGTGGTTTTCGTTGCTCTGAAAATGGCCGTCCTGATTTATTTTATACAAAATGGAGATGGCAACCCAAGGATTGCAATCTGCCAAGGTTCAATGCCACCAAGATACTAGAAAAGTTGAAGAACAAAAGGGTGGCATTTGTGGGCGATTCGATAGGAAGAAATCAATGGGAATCTCTTCTGTGCATGCTTTCATCTGGATTTTCAAATAAAGATTCAATCTTTGAAGTGAATGGGAATCCCATTACAAAACACAAGGGGTCTTTGGTGTTTTTGTTTAAGGATTATAACTGTACTGTCGAGTATTATCGAGCACCCTATCTTGTCTTGCAAAGCAGGCCTCCTTCTGGTGTTTCTCCAAAGATTAAGACAACTTTGAAATTGGATCAAATGGATTGGTCTTCTGCTAAGTGGAGAGATGCAGATTTACTTGTTTTTAACTCTGGACACTGGTGGAATTATGAAAAAACAATAAGAGGGGGATGTTACTTTCAAGAAAGAGAGGAAGTGAAGATGGAGATGATGGTAGAAGAAGCATATCGGAAATCGATGGAAACCATGGTTCGCTGGGTTCACAACAAACTCAACTTCAACAAGTCTCGAGTCTTTTTCCGCACCTATTCCCCTGTTCATTTCAGAGGTGGAGATTGGAAAAGTGGAGGAAGCTGTCATTTGGAGACGCTTCCAGATCTCGGAGCTTCGCTGGTGCCACCGGAGACGTGGTCTCATTTCACGATAGCCGATCAAGTATTATCGTCTTACTCTCCAACTTCCTCTAAATTCAAAGTATTAAATGTTACTGCTCTGAGTACTAGGCGAAAAGATGGTCATTCCTCTTTGTACTATCTCGGACCTAGCTTCAGCCCCGCACCTATTCACCGACAGGATTGTAGTCACTGGTGTTTGCCCGGAATTCCTGATATTTGGAACGAGTTACTTTTTGCATTCTTCTTAAAGAAACCCATGGCGTCTGCAATTGTGAGTCGAAGCGGTTTGTCGACGTTGAAATCAGTGGTTGCAAATTTAGGTCTGGGACCTTCGTCGAGATGTTATGCGGCCGTTGCTGTTGGGACTGACATCGTGTCAGCTGCCCCCAATGTTACTCTCCAGAAGGCTCGGAGCTGGGATGAAGGAGTCTCGTCCAACTTCGCCACTACTCCACTTAAAGACTTATTCAAGGTCATCGCATCAGTTTCTTATTCGCATTTCTTAATGGAATACTTTGGATTTGGCATGTTTCAGGGAAAGAGTGTTGTCATCTTTGGACTTCCTTCTTGTGTGCACTTCCAGGGTGCCTACACTGGAGTTTGTTCTAAGCAGCATGTTCCTAGCTACATGAAGAATATTGATAAATTTAGGTCAAAGGGCATTGATTCTGTTATTTGCGTGGCTGTTAATGATCCATATGCTCTGAATGGATGGGCTGAGAAACTTCAAGCTAAAGAAGCTATTGAATTTTATGGTGACTTTGATGGGAGTTTCCACAAGAGTTTGGAATTGGATAAGGATCTTTCAGCTGCTTTGCTTGGTCCGCGCTCGCAAAGATGGTCGGCATATGTGTTAGATGGAGTGGTGAAGGTTCTCAACGTAGAGAAAGCTCCGTCGGACTTCAATGTTTCCAGTGGCGATGTGATATTGTCGCAAATCTAA 2010 43.48 MSKKPSEPDLEVASSMAFFEVCKKLKRFILFEPYVGFLGFFFISCCVISCFVYMDSSILGNSFVMSYQPESYAWLQRNGSGQTQKMDFLEEQSSGCDLFDGDWVWDETYPLYDSADCPFLDSGFRCSENGRPDLFYTKWRWQPKDCNLPRFNATKILEKLKNKRVAFVGDSIGRNQWESLLCMLSSGFSNKDSIFEVNGNPITKHKGSLVFLFKDYNCTVEYYRAPYLVLQSRPPSGVSPKIKTTLKLDQMDWSSAKWRDADLLVFNSGHWWNYEKTIRGGCYFQEREEVKMEMMVEEAYRKSMETMVRWVHNKLNFNKSRVFFRTYSPVHFRGGDWKSGGSCHLETLPDLGASLVPPETWSHFTIADQVLSSYSPTSSKFKVLNVTALSTRRKDGHSSLYYLGPSFSPAPIHRQDCSHWCLPGIPDIWNELLFAFFLKKPMASAIVSRSGLSTLKSVVANLGLGPSSRCYAAVAVGTDIVSAAPNVTLQKARSWDEGVSSNFATTPLKDLFKVIASVSYSHFLMEYFGFGMFQGKSVVIFGLPSCVHFQGAYTGVCSKQHVPSYMKNIDKFRSKGIDSVICVAVNDPYALNGWAEKLQAKEAIEFYGDFDGSFHKSLELDKDLSAALLGPRSQRWSAYVLDGVVKVLNVEKAPSDFNVSSGDVILSQI 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20907746 20913548 + Bpe018163.1 Bpe05g00749 104526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00749 669 PANTHER - 32 445 - -
Bpe05g00749 669 CDD PRX5_like 533 667 IPR037944 -
Bpe05g00749 669 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 148 435 IPR026057 GO:0016740
Bpe05g00749 669 Gene3D Glutaredoxin 472 669 - -
Bpe05g00749 669 Pfam PMR5 N terminal Domain 95 147 IPR025846 -
Bpe05g00749 669 Pfam Redoxin 533 660 IPR013740 GO:0016491
Bpe05g00749 669 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 32 445 IPR029962 GO:0016413
Bpe05g00749 669 SUPERFAMILY Thioredoxin-like 532 660 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00749 - - - csv:101220391 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00540 Bpe-Chr1:3500857 Bpe05g00749 Bpe-Chr5:20907746 4.05E-25 dispersed
Bpe02g00724 Bpe-Chr2:5019186 Bpe05g00749 Bpe-Chr5:20907746 7.88E-119 dispersed
Bpe03g00423 Bpe-Chr3:22479275 Bpe05g00749 Bpe-Chr5:20907746 0 dispersed
Bpe04g01550 Bpe-Chr4:21860615 Bpe05g00749 Bpe-Chr5:20907746 5.55E-21 dispersed
Bpe05g00749 Bpe-Chr5:20907746 Bpe15g00402 Bpe-Chr15:15527691 1.67E-94 dispersed
Bpe08g00482 Bpe-Chr8:3131218 Bpe05g00749 Bpe-Chr5:20907746 6.20E-26 dispersed
Bpe05g00749 Bpe-Chr5:20907746 Bpe04g01451 Bpe-Chr4:21145536 2.65E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004153 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 2 2 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00749 Bpe_Chr05 FPKM 11.650663 13.320578 14.878717 15.696211 10.765637 11.716915 11.86007 12.563169 12.951473 11.555392