Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00798 ATGGAGTCGGGAACCAAAGCAACGTCTTCAATTCAACAAGCACAGTCCTCGAATACGAATACGAGTATTTTGAGAGCTCAACAAACTGAATCCATTCGGAAAGCCGTTTCACAGTTCACCGTCGACGCTCAACTCCATGCAGTCTTCGAGCAGTCAGGTGAGTCGGGTAAGTCTTTCGACTATTCTCAATCTGTGAAAACCACCACACAATCTGTCCCAGAGCAACAAATAACTGCCTACTTGTCCAGAATTCAGAGGGGTGGGCATATTCAGCCTTTTGGGTGTATGATAGCCGTCGATGAGGGCACTTTTCGAGTCATTGCCTACAGCGAAAATGCCCGAGAAATGCTTGGTCTTACTTTTCAATCAGTCCCTAGTCTTGAAAAACCTGAAATTCTTGCAATCGGCACCGATGTTCGTGCATTATTCACACCCTCGAGCTCAATTCTACTGGAGAAGGCATTTGGGGCTCGAGAAATCACATTGTTAAACCCTATTTGGATTCACTCCAAGAATTCAGGCAAGCCCTTTTATGCAATTTTGCATCGGATTGATGTAGGTATTGTTATTGATCTGGAGCCTGCTAGGACTGAGGACCCCGCTTTGTCCATTGCTGGGGCAGTTCAGTCACAGAAGCTAGCTGTGCGTGCAATTTCTCAGTTGCAGTCGCTTCCTGGTGGAGATATTAAGCTTTTGTGTGATACTGTTGTTGAAAGTGTGAAGGAACTAACTGGTTACGACAGAGTTATGGTGTATAAATTTCATGATGACGAGCATGGCGAGGTTGTGGCAGAAAGTAAGAGACCAGATTTGGAGCCATATATTGGATTGCACTATCCTGCCACTGATATACCTCAGGCATCACGGTTTCTCTTCAAGCAGAATCGGGTCAGAATGATTGTAGATTGCCATGCTACACCTGTTGGTGTGGTCCAGGATGATGGGCTTATGCAGCCTCTGTGCTTGGTTGGTTCAACACTTCGTGCCTCTCACAAATGTCATTCCCAATATATGGCCAATATGGGTTCCATTGCCTCGTTAGCCATGGCAGTTATCATCAATGGCAATGAGGAGGAAGCAGTTGGAAGGAACTCGTGGAGGTTATGGGGCCTTGTTGTTTGCCATCACACTACTGTGCGTTGTATCCCATTCCCACTTCGTTATGCTTGCGAGTTCCTGATGCAGGCTTTTGGGCTCCAATTGAATATGGAATTGCAATTGGCTTCACAGCTTTCTGAAAAACATGTTTTGAGGACTCAAACCCTCTTATGCGACATGCTTCTACGTGATTCACCTTCTGGAATTGTTACTCAAAGCCCAAGCATTATGGACCTTGTGAAATGTGATGGGGCAGCACTATACTACCAGGGAAAATATTACCCATTGGGTGTGACCCCCACTGAATCCCAGATTAGGGACATTGTGGAGTGGTTGTTGGCTTTCCATGCAGATTCGACAGGATTAAGCACAGATAGCTTGGCTGATGCTGGCTACCCTGGAGCAGCATCACTGGGTGATGAGGTTTGTGGAATTGCAGTTGCTTATATCACTCAAAGAGATTTTTTGTTCTGGTTTCGATCCCATACTGCAAAAGAGGTCAAGTGGGGTGGCGCAAAGCATCATCCAGATGACAAAGATGATGGTCAGAGAATGCATCCTCGTTCATCTTTCAAGGCATTTTTAGAAGTGGTGAAAAGCCGTAGTTTGCCTTGGGAGAACCCAGAAATGGATGCAATTCATTCTTTGCAGCTTATCTTAAGAGACTCATATCGACTTGCAGAGGATAATTCTAAGGCGGTGATACATTCCGAGCTTGAGGATCATGAGATTCAATGCATGGATGAGCTCAGCTCAGTTGCCAGAGAAATGGTTAGATTGATAGAGACGGCAACTGCTCCAATATTTGCTGTGGATGTGGGGGGTTGCATAAATGGATGGAATGGGAAGATTGCAGAGTTAACTAGACTGCCAGTTGAACAAGCTATGGGGAAATCCTTGGTTTATGATCTTGTTTATAAGGAATCTGAACAAACTGTCGATAAGCTTCTCTATCGTGCTTTAAGAGGGGAAGAAGATAAAAATGTAGAGATAAAATTAAGGACATTTGGGTTAGAAGATGATAAAAAGCCGGTGTTTGTAGTGGTTAATGCTTGCTCTAGCAAGGATTACAAAAACAATATTGTTGGAGTTTGTTTTGTTGGCCAGGATGTTACTATCCAAAAAGTTGTAATGGACAAGTTCATCCATATACAAGGTGATTACAAGGCCATTGTACATAGTCCTAGTCCACTAATCCCTCCCATATTTGCATCAGATGATAATACATGTTGTTCAGAGTGGAATACAGCTATGGAAAAACTAACGGGATGGTCTAGAGGAGACGTTATCGGAAAAATGTTGGTTGGGGAGGTTTTTGGCAATTGTTGTAAGCTCAAGGGTCCAGATGCGTTGACAAAATTTATGATTGTCTTGCACAATGCTATTGGAGGTGAGGACACAAATAAGTTTTCATTTTCTTTTTTTGACCGCAATAGGAAATATGTGCAAGCTCTACTAACAGCGAACAAGAGGGTGAATATGGGTGGTCAGGTCATTGGGGCCTTCTGTTTCTTGCAGATTGCTAGTCCTGAGTTGCAACGAGCTCTTAAAGTTCAGAGCCAGCAGGAGAAAAGGCGGTCTGTGAGGATGAAAGAGTTGGCTTACGTTTGCCAGGAAATAAAGAATCCTCTGAGTGGAATAAGGTTTACTAACTCGCTTTTGGAGGGCACAACATTAACTGAAGATCAGAAGCAATTTCTTGAAACTAGTGCTGCTTGTGAGAGGCAGATTTTAAAGATAATTGAAGATATTGATTTGGAAACAATTGAAGATGGTTCTTTGGAGCTTGAGAAGGCCGAGTTCTTTTTGGGGAGTGTCATCAATGCTGTTGTTAGCCAAATAATGATATTGCTGAGAGAGAAAAATTTACAGTTGATTCGAGATATACCAGAAGAAGTTAAAACTTTATCAGTCTATGGAGATCAAGTGAGAATTCAACAGGTCTTGGCCGATTTCTTGTTGAACATGGTGCGATATGCTCCATCTCCCGAAGGATGGGTTGGAATTCACGTGTGGCCAAGCATAAACAAAGTTTCTGAAAGTATCACTCTTGTGCGTATCGAATTCAGGATGGTATGCCCCGGCGAAGGTCTTCCCCCTGATTTAGTTCACGACATGTTCAATAGCAGTCAATGGATGACCAAAGAAGGCCTCGGGCTGAGCATGTGTCGGAAGATTCTGAAGCTCATGAAGGGTGAAGTCCAGTACATCAGAGAGTCAGAAAGATGCTATTTCTTAACTATTATTGATCTTCCGACCAGTGAACAACATCAACTAGGACATTAA 3384 43.41 MESGTKATSSIQQAQSSNTNTSILRAQQTESIRKAVSQFTVDAQLHAVFEQSGESGKSFDYSQSVKTTTQSVPEQQITAYLSRIQRGGHIQPFGCMIAVDEGTFRVIAYSENAREMLGLTFQSVPSLEKPEILAIGTDVRALFTPSSSILLEKAFGAREITLLNPIWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVKELTGYDRVMVYKFHDDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVGVVQDDGLMQPLCLVGSTLRASHKCHSQYMANMGSIASLAMAVIINGNEEEAVGRNSWRLWGLVVCHHTTVRCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTESQIRDIVEWLLAFHADSTGLSTDSLADAGYPGAASLGDEVCGIAVAYITQRDFLFWFRSHTAKEVKWGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKSRSLPWENPEMDAIHSLQLILRDSYRLAEDNSKAVIHSELEDHEIQCMDELSSVAREMVRLIETATAPIFAVDVGGCINGWNGKIAELTRLPVEQAMGKSLVYDLVYKESEQTVDKLLYRALRGEEDKNVEIKLRTFGLEDDKKPVFVVVNACSSKDYKNNIVGVCFVGQDVTIQKVVMDKFIHIQGDYKAIVHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSRGDVIGKMLVGEVFGNCCKLKGPDALTKFMIVLHNAIGGEDTNKFSFSFFDRNRKYVQALLTANKRVNMGGQVIGAFCFLQIASPELQRALKVQSQQEKRRSVRMKELAYVCQEIKNPLSGIRFTNSLLEGTTLTEDQKQFLETSAACERQILKIIEDIDLETIEDGSLELEKAEFFLGSVINAVVSQIMILLREKNLQLIRDIPEEVKTLSVYGDQVRIQQVLADFLLNMVRYAPSPEGWVGIHVWPSINKVSESITLVRIEFRMVCPGEGLPPDLVHDMFNSSQWMTKEGLGLSMCRKILKLMKGEVQYIRESERCYFLTIIDLPTSEQHQLGH 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21322307 21327142 + Bpe018211.1 Bpe05g00798 104575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00798 1127 Pfam PAS fold 753 872 IPR013767 GO:0006355
Bpe05g00798 1127 Pfam PAS fold 622 737 IPR013767 GO:0006355
Bpe05g00798 1127 CDD PAS 630 737 IPR000014 -
Bpe05g00798 1127 Gene3D - 209 566 IPR029016 -
Bpe05g00798 1127 SMART HKATPase_4 1006 1121 IPR003594 -
Bpe05g00798 1127 Gene3D - 875 957 - -
Bpe05g00798 1127 SMART gaf_1 228 415 IPR003018 GO:0005515
Bpe05g00798 1127 Gene3D - 410 583 IPR043150 -
Bpe05g00798 1127 ProSiteProfiles PAS repeat profile. 753 805 IPR000014 -
Bpe05g00798 1127 Gene3D PAS domain 83 331 - -
Bpe05g00798 1127 ProSiteProfiles PAS repeat profile. 619 690 IPR000014 -
Bpe05g00798 1127 TIGRFAM sensory_box: PAS domain S-box protein 626 740 IPR000014 -
Bpe05g00798 1127 Pfam PAS fold 79 195 IPR013654 GO:0006355
Bpe05g00798 1127 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1108 IPR003594 -
Bpe05g00798 1127 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 969 1118 IPR036890 -
Bpe05g00798 1127 CDD HATPase_Phy-like 1005 1117 IPR044767 -
Bpe05g00798 1127 Pfam Phytochrome region 418 589 IPR013515 GO:0006355|GO:0009584
Bpe05g00798 1127 MobiDBLite consensus disorder prediction 1 21 - -
Bpe05g00798 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 767 870 IPR035965 -
Bpe05g00798 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 624 733 IPR035965 -
Bpe05g00798 1127 PIRSF Phytochrome_conventional 9 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bpe05g00798 1127 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 1121 - -
Bpe05g00798 1127 PANTHER PHYTOCHROME 12 1121 - -
Bpe05g00798 1127 Gene3D PAS domain 766 874 - -
Bpe05g00798 1127 SMART pas_2 752 822 IPR000014 -
Bpe05g00798 1127 SMART pas_2 621 688 IPR000014 -
Bpe05g00798 1127 CDD PAS 764 872 IPR000014 -
Bpe05g00798 1127 Pfam His Kinase A (phospho-acceptor) domain 899 958 IPR003661 GO:0000155|GO:0007165
Bpe05g00798 1127 Pfam GAF domain 228 405 IPR003018 GO:0005515
Bpe05g00798 1127 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 228 395 IPR016132 -
Bpe05g00798 1127 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 885 950 IPR036097 GO:0000155|GO:0007165
Bpe05g00798 1127 SUPERFAMILY PYP-like sensor domain (PAS domain) 84 196 IPR035965 -
Bpe05g00798 1127 Gene3D - 958 1122 IPR036890 -
Bpe05g00798 1127 ProSiteProfiles Histidine kinase domain profile. 901 1121 IPR005467 -
Bpe05g00798 1127 CDD HisKA 895 950 IPR003661 GO:0000155|GO:0007165
Bpe05g00798 1127 Gene3D PAS domain 617 741 - -
Bpe05g00798 1127 SUPERFAMILY GAF domain-like 413 589 - -
Bpe05g00798 1127 SUPERFAMILY GAF domain-like 208 402 - -
Bpe05g00798 1127 PRINTS Phytochrome signature 435 455 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 553 571 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 243 262 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 328 349 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 735 755 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 641 656 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 622 638 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 520 539 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 715 732 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 PRINTS Phytochrome signature 143 165 IPR001294 GO:0006355|GO:0009584
Bpe05g00798 1127 SMART HisKA_10 894 958 IPR003661 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00798 K12121 PHYB; phytochrome B - zju:107418995 1928.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00798 Bpe13g00697 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00798 Bpe-Chr5:21322307 Bpe13g00697 Bpe-Chr13:13599291 0 dispersed
Bpe05g00798 Bpe-Chr5:21322307 Bpe02g00962 Bpe-Chr2:8964442 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g63 Blo01g00030 . . Bda08g00333 . . . Bma05g00993 . . Cma06g01564 Cma14g01590 Car06g01329 Car14g01399 Sed02g1136 Cpe08g00149 Cpe03g01327 Bhi01g01090 Tan10g1077 Cmetu06g1585 . Hepe05g1374 . Lcy11g1336 . . . . . . . Cone14ag0717 Cone15ag0729 . . Lsi05g01420 . . Cme06g00790 . Blo07g00144 Bda11g00500 . Bpe05g00798 Bpe13g00697 . Bma06g01466 . Cmo06g01560 Cmo14g01619 . . . . . . . . . . . . . Cla05g00707 Cam05g0774 Cec05g0782 Cco05g0775 Clacu05g0764 Cmu05g0730 Cre05g0804 . Csa03g01519 Chy06g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00409 . 493 1672 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1452.6
Bpe15g00478 . 564 1761 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1403.3
Bpe03g00033 . 17 996 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1351.3
Bpe14g00730 . 303 1276 Histidine Kinase Gene Family AT2G01830 52.3 6.5e-276 947.2
Bpe05g00945 . 57 1056 Histidine Kinase Gene Family AT2G01830 50.3 2.2e-263 905.6
Bpe02g00521 . 1 1048 Histidine Kinase Gene Family AT5G10720 53.8 5.4e-279 957.2
Bpe02g01845 . 2 1121 Histidine Kinase Gene Family AT1G09570 77.2 0.0e+00 1759.2
Bpe07g00650 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1253.0
Bpe05g00798 BCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1168.3
Bpe13g00697 BCT 29 1120 Histidine Kinase Gene Family AT1G09570 52.9 0.0e+00 1158.3
Bpe02g00962 . 36 1111 Histidine Kinase Gene Family AT1G09570 50.4 6.9e-313 1070.1
Bpe05g00798 BCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1636.3
Bpe13g00697 BCT 30 1084 Histidine Kinase Gene Family AT2G18790 75.0 0.0e+00 1599.7
Bpe02g00962 . 15 1050 Histidine Kinase Gene Family AT2G18790 61.9 0.0e+00 1279.6
Bpe11g01109 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.4 0.0e+00 1214.5
Bpe07g00650 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1111.3
Bpe02g01845 . 22 1056 Histidine Kinase Gene Family AT2G18790 51.2 1.4e-308 1055.8
Bpe07g00650 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1398.6
Bpe13g00697 BCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1124.4
Bpe05g00798 BCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.2 0.0e+00 1119.4
Bpe02g01845 . 10 1116 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1107.8
Bpe05g00798 BCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1655.2
Bpe13g00697 BCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1642.5
Bpe02g00962 . 35 1111 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1305.0
Bpe11g01109 . 20 1107 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1245.0
Bpe07g00650 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1144.8
Bpe02g00962 . 14 1112 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1396.3
Bpe11g01109 . 14 1108 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1327.0
Bpe05g00798 BCT 37 1119 Histidine Kinase Gene Family AT4G18130 59.1 0.0e+00 1258.8
Bpe13g00697 BCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.2 0.0e+00 1249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00798 Bpe_Chr05 FPKM 9.336758 9.923297 8.462673 9.335919 11.374925 9.784626 10.302621 9.17105 9.691665 9.408627