Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00807 ATGGTGGCAGTTTCTCCGAATCCAGTTTATGGCGAAGTGATAAGCCGAGAGGTCGTCGAGCTTCCAGTTATCGACCTTTCTGCAGAGAGATCAGAGGTGGCGAAGATGATAGTGAAGGCCTGCGAAGACTACGGATTTTTCAAGGTCATCAACCATGGAGTTTCTGACGACGTAGTTGCCCAGCTCGAGGATGAAAGCTTCAAGTTTTTTGCTAAACCACAGTCAGAAAAACAAGCAGCCGGTCCGGCAAATCCTTTTGGCTATGGCTGCAAAACCATTGGCTTCAATGGCGACGTCGGAGAAGTTGAATATCTTCTTTTCAATACAAATCCTTTCTCCATTTCTCAGATGTCCGAAACTATCTCCAACGACCCAGTAAAATTCAGCTCGGCTTTGAGTGGATATATAGAGGGAGTTGAGGGCTTGGCATGTGAGATATTGGATTTGATTGCAGAAGGGCTGTGGGTCCCAGACACTCAAGTTTTCAGCAGACTCATCAGGGACGTTGACAGTGACTCAGTTCTCAGGCTCAATCACTACCCGCCTGTGATCAAACGCTGCAGAGATAGGGACACGTCAGCCTCCGATGTTGGGTTTGGAGAGCATTCTGACCCTCAGATCTTGACCCTACTTCGATCCAACGACGTGGGTGGCCTCCAGATCTCCACTCTCGATGGGGTGTGGGTCCCTGTCTCTCCTGACCCCGCTGCCTTCTGTGTTAATGTTGGCGATGCTTTGCAGGCGATGACGAACGGGAGATTCGTAAGCGTGAGACATAGGGCCATGACGAACCACCACAATGCGAGGCTTTCGATTGCTTATTTTGGGGCACCGCCGCTGCCGCAGAGCATAATTGCGGTGCCGGAGGTGGTGGAGAGGAGGCCATGTCTGTACCGGCCGTTCACGTGGGCGGAGTACAAGAAGACTACCTACTCACTAAGGCTGGGAGACACTAGGCTTTCACTTTTCAAAACTGGGTCTTAA 984 50.81 MVAVSPNPVYGEVISREVVELPVIDLSAERSEVAKMIVKACEDYGFFKVINHGVSDDVVAQLEDESFKFFAKPQSEKQAAGPANPFGYGCKTIGFNGDVGEVEYLLFNTNPFSISQMSETISNDPVKFSSALSGYIEGVEGLACEILDLIAEGLWVPDTQVFSRLIRDVDSDSVLRLNHYPPVIKRCRDRDTSASDVGFGEHSDPQILTLLRSNDVGGLQISTLDGVWVPVSPDPAAFCVNVGDALQAMTNGRFVSVRHRAMTNHHNARLSIAYFGAPPLPQSIIAVPEVVERRPCLYRPFTWAEYKKTTYSLRLGDTRLSLFKTGS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21384628 21387368 + Bpe018220.1 Bpe05g00807 104584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00807 327 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 16 325 - -
Bpe05g00807 327 PRINTS Isopenicillin N synthase signature 202 223 - -
Bpe05g00807 327 PRINTS Isopenicillin N synthase signature 238 264 - -
Bpe05g00807 327 PRINTS Isopenicillin N synthase signature 37 54 - -
Bpe05g00807 327 SUPERFAMILY Clavaminate synthase-like 13 317 - -
Bpe05g00807 327 Gene3D - 7 314 IPR027443 -
Bpe05g00807 327 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 16 325 - -
Bpe05g00807 327 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 278 IPR005123 -
Bpe05g00807 327 Pfam 2OG-Fe(II) oxygenase superfamily 172 276 IPR044861 -
Bpe05g00807 327 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 88 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00807 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - tcc:18603710 474.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00497 Bpe-Chr3:24795932 Bpe05g00807 Bpe-Chr5:21384628 1.46E-126 dispersed
Bpe05g00807 Bpe-Chr5:21384628 Bpe08g00634 Bpe-Chr8:5906146 6.74E-109 dispersed
Bpe05g00807 Bpe-Chr5:21384628 Bpe06g00592 Bpe-Chr6:16778410 9.97E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g30 Blo01g00042 . . Bda08g00321 . . . Bma05g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001435 2 2 2 2 3 2 3 2 2 2 2 2 3 2 2 3 2 6 3 2 2 2 2 3 4 2 2 2 2 2 72