Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00808 ACTCTGACGATGGACTTTTCTGGCGATCCATCCACTCGGAAACGCGTCGATTTGGGAGGTCGAAGTTCAAAAGAAAGAGATAGGCAGAAGCTTCTGGATCAGATGAAGTTTGAGCGAAACCGCCGGTGGCAGGTGCGGCAGCAAAATTCTGCTGCACTCAAAATTCAGAAATGCTTCAGAGGGAGAAGGGCTTCGGAAGCTGCTCATTCTATGGTGCGAGAGGAATTTTATGCGTACTATGGGAAGAATTGCCAATATGTAGACAGGCACTGTTTTGGTCCTAATTCAGAGTTCCTCCGTCAGTTACTTTTTTTCTTTAACACCGATAATGCTGGTGATTTTTCAATCCTTGTAGAGACATGCCGATTACTATCAAAATATCTTCAAGATGACGGGGATATTGTGAGTCTCTTTGCCCGTGCTGATTATTTAAAAAAGCAAGCTCTGGTGGACTTCAGAGTAAAGAAACTTGCATATGCTTGTATTCAGGCTGTATATCAGACTAGGAGCCAAATTTTTGTAACACCAGAGGATTCCATGGCATCAAATACCACTCTGCTGTTTGAAGCAGTAGCTTCCTTGTTAAATCCCCAACTTCCTTGGGTTTGTAAGACAGTTAGCTATTTCCTAGATAGAAACGTGTACGCACTTGTTAGGGAAATCATTCTTGCTGAGAAGAGAAATATGAAGGTTCACGCCTCAATTGTTCAAGTATCTTCAATAGAGCGGGTGCTTGGTTTAATGACAATACACATTGGCGAGGAGCCTTGTAGTTGCTCTAATACAGACCCCCATTGGAATTTCTCTTCCCAGATTCTTACTATTCCTTTATCATGGAAGATATTCCCATACTTGAAGGAAGTTTTTGCGAAGAGAGGGCTGATCCAACATTACATTCATCAGATGGCATTGTGTGCTAGAAATTATGATACACTACTCCCAAAGGATGTGGCACCCGATTTTCCTGGTTATGCATGTCTTCTTGGAAATATGTTAGAAGTTGCTGGGATCACTTTATCACACCCTGACTGTACATTTGAAATGGCTGTAGACCTTGCTTCTGGTGCAACGTCCTTGTTGCAGGCATTTCCATCAATAAAACCATCGAATAGAGCAACTAAAGAAAGTTCGGCATACGAGGATGATATTAATGTGGCTGATGAAGAAATGGTGTTGAATAAAGATGTGGAAAAACAGATACATGATGCCATAGATTCACGTTTTCTTTTGCAGTTGACAAATGTTTTATTTGGAGGGATTTCAAATGTTAGTGGGTCCTATACTGTTCTTTATGATAAAGAGGTTGCAGCAGTTGGTGCAGCTTGTGCATTCCTACATGTTACTTTCAACACTTTGCCTCTGGAGCGAATCATGACTGTTTTGGCGTATAGAACTGAGCTAGTTCCAGTCCTTTGGAATTTTATCAAGCGGTGCCAAGAAAATAAAAAATGGCCACACTTGACAGAGACAATAAAGTATTCACCAGGAGATACACCTGGTTGGCTACTACCTTTGGCTGTTTTCTGTCCCGTGTACAAGCACATGCTTACGATTATTGATAACGAGGAGTTCTATGAGCAGGAAAAGCCATTATCATTGAAGGATATTCGATATTTAATCATTATTTTGAGACAGTTCTTATGGCAGCTTCTATGGGTGATTCCTACAGCTGCTGGTTATTCTGGTAAATCTCTTAACAATACTTCTGCTACCAAGTTGCAGCCAGTGGAGTATATTCAATACAGGGTCAGCCTTGTAGTTTCAGAGCTCTTATGTCAGCTCCAAGATTGGAACAGCAGAAGACAATTTGCGCCCCTGAGCGATTTCCATGCTGATGGTGTCAATGAATTTTTTATTTCACAGGCTCTGGTTGAAAATACCCGAGCAAATGACATTCTGAAGCAAGCTCCTTTTTTGGTACCATTTACGAGCAGAGTTAAAATATTCACGTCACAATTAGCTGCAGTTAAGCAACGGCATGATTCACATGCTGTTTTTGCCAGAAATCGCTTCAGAATTCGACGAAATCGAATATTGGAAGATGCTTATTCTCAGATGAGTGCGTTGTCTGAAGACGATCTACGTGGATTGATTCGTGTAACATTTGTTAATGAGTTTGGAGTTGAGGAGGCTGGCATTGATGGAGGAGGTATTTTCAAAGATTTCATGGAGAACATCACTCGTGCAGCTTTTGATGTCCAGTATGGTTTATTTAAGGAAACTGCTGATCACTTACTTTATCCCAACCCTGGATCAGGAATGATACACGAGCAACACCTTCAATTTTTTCATTTCCTCGGCTCTCTCCTTGCAAAGGCAATGTTTGAAGGAATTCTTGTTGATATTCCATTTGCAACATTCTTCCTGAGCAAGTTAAAACAGACGTACAACTATTTAAATGATTTACCGTCTTTGGATCCAGAGTTGTATCGCCACCTTATTTTCTTAAAGCATTTCAACGGTGACATTTCAGACTTAGAACTGTACTTCGTCATTGTAAATAATGAATATGGAGAGCAAAAAGAAGAAGAGCTGCTTCCTGGAGGAAAAGATCTTCGTGTTACCAATGAAAATGTTATCACATTTATTCATCTGGTTTCAAATCACCGCTTAAATTTTCAGATACGGCAACAAAGTTCTCACTTCTTAAGAGGTTTTCAGCAGCTTATACAGAAAGAATGGATCGATATGTTTAATGAACACGAACTTCAGCTTCTAATATCTGGTTCACTTGAGAGCTTGGATGTTGATGATTTAAGATCAAATACCAATTACACGGGTGGCTATCAAAAAGAGCACTATGTCATTGAGATGTTTTGGGAAGTACTCAAAAGCTTTACCGTTGAAAACCAAAAGAAATTTCTGAAGTTCGTTACTGGGTGCTCTCGAGGACCATTGCTTGGATTTAAATATCTTGAGCCGTTATTTTGCATACAAAGGGCTGCTGGTAGTGCTAATGAAGAAGCGCTTGACCGTTTACCTACATCAGCTACTTGTATGAATCTTCTAAAGTTGCCCCCTTATGGAAGCAAGGAGCAACTGACTACAAAATTGCTTTACGCGATAAATGCAGACGCCGGGTTTGATTTAAGCTGA 3096 40.41 TLTMDFSGDPSTRKRVDLGGRSSKERDRQKLLDQMKFERNRRWQVRQQNSAALKIQKCFRGRRASEAAHSMVREEFYAYYGKNCQYVDRHCFGPNSEFLRQLLFFFNTDNAGDFSILVETCRLLSKYLQDDGDIVSLFARADYLKKQALVDFRVKKLAYACIQAVYQTRSQIFVTPEDSMASNTTLLFEAVASLLNPQLPWVCKTVSYFLDRNVYALVREIILAEKRNMKVHASIVQVSSIERVLGLMTIHIGEEPCSCSNTDPHWNFSSQILTIPLSWKIFPYLKEVFAKRGLIQHYIHQMALCARNYDTLLPKDVAPDFPGYACLLGNMLEVAGITLSHPDCTFEMAVDLASGATSLLQAFPSIKPSNRATKESSAYEDDINVADEEMVLNKDVEKQIHDAIDSRFLLQLTNVLFGGISNVSGSYTVLYDKEVAAVGAACAFLHVTFNTLPLERIMTVLAYRTELVPVLWNFIKRCQENKKWPHLTETIKYSPGDTPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRYLIIILRQFLWQLLWVIPTAAGYSGKSLNNTSATKLQPVEYIQYRVSLVVSELLCQLQDWNSRRQFAPLSDFHADGVNEFFISQALVENTRANDILKQAPFLVPFTSRVKIFTSQLAAVKQRHDSHAVFARNRFRIRRNRILEDAYSQMSALSEDDLRGLIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEGILVDIPFATFFLSKLKQTYNYLNDLPSLDPELYRHLIFLKHFNGDISDLELYFVIVNNEYGEQKEEELLPGGKDLRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHELQLLISGSLESLDVDDLRSNTNYTGGYQKEHYVIEMFWEVLKSFTVENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSANEEALDRLPTSATCMNLLKLPPYGSKEQLTTKLLYAINADAGFDLS 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21390969 21412211 + Bpe018221.1 Bpe05g00808 104585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00808 1031 MobiDBLite consensus disorder prediction 10 25 - -
Bpe05g00808 1031 MobiDBLite consensus disorder prediction 1 25 - -
Bpe05g00808 1031 Gene3D Hect, E3 ligase catalytic domains 671 909 - -
Bpe05g00808 1031 PANTHER BNAC01G43970D PROTEIN 4 1031 - -
Bpe05g00808 1031 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 1031 IPR044611 GO:0000209|GO:0061630
Bpe05g00808 1031 SMART hect_3 688 1031 IPR000569 GO:0004842
Bpe05g00808 1031 ProSiteProfiles HECT domain profile. 690 1031 IPR000569 GO:0004842
Bpe05g00808 1031 CDD HECTc 679 1029 IPR000569 GO:0004842
Bpe05g00808 1031 ProSiteProfiles IQ motif profile. 48 75 IPR000048 GO:0005515
Bpe05g00808 1031 Gene3D Hect, E3 ligase catalytic domain 913 1030 - -
Bpe05g00808 1031 SUPERFAMILY Hect, E3 ligase catalytic domain 665 1023 IPR035983 GO:0004842
Bpe05g00808 1031 Pfam HECT-domain (ubiquitin-transferase) 726 1031 IPR000569 GO:0004842
Bpe05g00808 1031 Gene3D Hect, E3 ligase catalytic domain 795 874 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00808 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - qsu:112022332 1576.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01555 Bpe-Chr4:21883132 Bpe05g00808 Bpe-Chr5:21390969 4.42E-94 dispersed
Bpe05g00808 Bpe-Chr5:21390969 Bpe14g00480 Bpe-Chr14:4259654 3.44E-66 dispersed
Bpe05g00808 Bpe-Chr5:21390969 Bpe12g00120 Bpe-Chr12:857089 4.36E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00808 Bpe_Chr05 FPKM 0.167813 0.474889 0.0 0.0 0.0 0.0 0.0 0.321658 0.204112 0.062662
Bpe05g00808 Bpe_Chr05 FPKM 0.187255 0.376078 0.0 0.0 0.0 0.0 0.0 0.26538 0.183316 0.0
Bpe05g00808 Bpe_Chr05 FPKM 0.111539 0.421701 0.0 0.0 0.0 0.0 0.0 0.271785 0.146707 0.0
Bpe05g00808 Bpe_Chr00 FPKM 0.147752 0.433312 0.0 0.0 0.0 0.0 0.0 0.328587 0.161345 0.0