Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00809 GAGGAGCTGATAAAGGAGCTCTGCAATGGGTTTGACCTGCTAGCAGACGAAGACAGAGGCGCCATAACTTCAGAAATCCTTAAAATGATCCCGGCGCTTCTGGGTTTTACGTATTTGTTCAAGCTCATGAATAGTAGCGGCCTCACCCAATCGAGAGAGAGTGAGAAAGTTTTACTGTTGATTGAAAGCGGTGTCAGATTGCATACTACTGCTTATATTCGGGACAAAAGTAATACTCCATCTGGATTCACTCTAAAACTGAGAAAACATATACGTACAAGAAGGCTTGAGGATGTGCGGCAACTCGGATATGATAGGATTATTCTATTTCAATTTGGACTTGGGGCTAGTGCACACTATGTTATCTTGGAGCTGTATGCCCAAGGAAACATTCTCCTCACTGATTCTGATTTCATGGTCTTGACTCTATTGCGATCACATAGGGATGATAATAAGGGGGTTGCAATTATGTCACGACATCGTTATCCAACAGAAATTTCTCGAGTTTTTGAAAGAACGAGTATTTCAAAATTACAGACAGCGCTCATATCTTCTCAGGAGCCTGGTGCTAAAGAGGATGTTCCAAACAGTGAAGATGGAAATCATATATTACTTTCAGCAAATGAAAATCAGGGGAACCACAAAAGTGGAAAGCCTTCCAAGCTGGGTAAAACTCAGTTTGATGGTGGTCGTCCCAAACAAGCCACTTTGAAAACTGTTCTTGGAGAGGCGTTAGGTTATGGACCTGCTCTTTCTGAGCATATTATACTAGAGGCTGGTCTACTACCAAGCATGAAGTTGCCCAAAGGTTTCAAAATAAGTGATGAACTGCTTCATCTTTTGATCCAAGCAATCGCAAAATTTGAAAACTGGCTTGAGGATATTATATCTGGTAATAGAGTTCCTGAAGGGTTTATTTTGATGCAGAACAAAGCTAGCCCCCCAAATGCCATTTATGATGAATTTTGCCCTGTTTTATTGAATCAATTCATGTCCAGGAAGTATGTTAAGTTTGAGGTATTCGATGCGGCTTTGGATGAATTCTACAGTAAAATTGAAACTCAAAGGTCAGAACAGCAACAGAAAACTAAGGAGAACTCTGCCTTTCAGAAGCTCAGTAAAATACGCTTGGATCAAGAAAATCGCGCCCAAACTCTGAAACAAGAAGTTGATAGATGTGTCAAAATGGCTGAATTGATTGAATACAATTTAGATGACGTGGATGCTGCTATATTAGCTGTTCGCGTTGCTCTTGCAAAGGGCATGAGTTGGGGTGATCTTACACGTATGGTGAAAGAAGAGAAGAAATCTGGGAATCCTGTGGCTGGCCTTATCGACAAACTTTATCTAGAAAGGAATTGCATGACTTTGCTGTTGAGCAACAACCTTGATGAAATGGATGATGACGAGAAGACACTTCCAGTTGACAAGGTTGAAGTTGATCTGTCACTTAATGCATACAGCAATGCTAGACGATGGTATGAACTGAAGAAAAAACAGGAAAGCAAGCAAGAGAAGACTGTCACAGCTCATGAAAAGGCATTTAAAGCTGCTGAAAGAAAAACTCGGCTTCAGCTTTCCCAAGAAAAAACTGTAGCAACAATTTCTCACATGCGCAAAGTTCATTGGTTTGAAAAATTTAATTGGTTCATTAGCAGCGAGAACTATTTGGTTATCAGTGGACGTGATGCGCAACAAAATGAGATGATAGTGAAACGATACATGTCGAAAGGAGATCTGTATGTCCATGCTGATCTGCATGGGGCTTCTAGTACTGTAATAAAGAATCACAGGCCGGAACAACCTGTTCCTCCTCTTACTTTAAACCAAACAGGATGTTTTACAGTTTGCCACAGCCAAGCATGGGATTCAAAAATGGTCACTAGTGCTTGGTGGGTTTATCCCCATCAGGTCAGTAAAACTGCCCCTACAGGAGAATACCTTACAGTCGGGAGTTTCATGATCCGTGGGAAAAAGAATTTTCTTCCTCCACACCCTCTTATTATGGGTTTCGGATTGTTATTTCGCTTGGATGAGAGCTCCTTGGGAACACATTTCAATGAAAGAAGAGTGAGAGGTGAGGAAGAAGGAATGGATGAAATTAAAGAAAGTGGGACTGTAATTGAAGAATCTGATTCTGACTCAGAGAAAGAAAGTGAGGACATAAATACTCATATGAGTAGACCGCCAGAAAATTCTAGAGACGGTCCTTCCAGTAATAATAACAGAACTATTTCTGATACCAAAGCTTCTAATGCGTTGAATGATAAATTTGTTGGAAACAATATGACCTTGAATATTTCAGATGAGGATAATGTACCTGATATTAAATATGTTTCTTCCTCACAACTTGAGGATCTTATTGATAGAGCTCTTGAACTTGGATCTGCTGCGACAGGCAGTAAAATTTATGGACATCAGACTTCTCAGGTTGATTTGGAAGAGGAACATAATCCTGAAAACCAAAAAGCTACTGCCAGAGAGAAACCTTATATTTCAAAAGCTGAAAGGAGAAAGCTCAAGAAAGGCCAAAAGGGTATTGGTGCGGGTGTAAATGTTGAGCAGGAAAATGAACAACTAGAAGAAAATGATGCAGTTGTTAGTCAGTTTGAGCAAAATGTTCATAATACCAAACCAGGTTCTGGAAAAATCAGTCGTGGGCAACGAGGCAAACTTAGGAAAGTGAAGGAGAAGTACGCAGATCAAGATGAGGAAGAAAGAAGCATTAGAATGGCTTTACTGGCTGTGAGCGGGTTCTTATTACATGTACCGACTCATGATTTATGTTGTAGCATCTCCAATGAAATATTGTTTATGTGGAACTTTTACATAGCAGACTCTGATGATGCTCCAAAAATCTGCTACAAGTGTAAGAAGGCAGGTCATTTATCTCGGGATTGCCAAGAGCATCCTGATGAAAATTCAAATAGCCATTCCAATGAAGGAGTTGAAGGCCATCTTTGCTCAAGGGTAGATGATGGCGCAAAACTGGACAGAGTACCTATGGAGGAGGAGGATATTCATGAGATAGGCGAAGAGGAGAAAGAGAAATTGAACGACGTGGATTACTTGACTGGGAATCCATTGCCCAGTGATATTCTGTTGTATGCCGTTCCAGTTTGTGGTCCTTACAGTGCTGTTCAATCTTATAAGTTCCGTGTGAAGATCATTCCAGGCACAGCGAAAAGAGGAAAAGCTGCAAAAACAGCCATGAATTTGTTTAGCCACATGTCGGAAACAACAAGTAGAGAGAAGGAATTAATGAAAGCGTGTACAGATCCGGAGCTGGTTTCGGCCATCATCGGCAATGTGAAGATAACTTCGGCGGGTCTTACACAACTGATGCAAAAGCAGAAGCAGGGAAAGAAAAGCAACAAAGCAGAAAACTGA 3390 40.8 EELIKELCNGFDLLADEDRGAITSEILKMIPALLGFTYLFKLMNSSGLTQSRESEKVLLLIESGVRLHTTAYIRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNILLTDSDFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTSISKLQTALISSQEPGAKEDVPNSEDGNHILLSANENQGNHKSGKPSKLGKTQFDGGRPKQATLKTVLGEALGYGPALSEHIILEAGLLPSMKLPKGFKISDELLHLLIQAIAKFENWLEDIISGNRVPEGFILMQNKASPPNAIYDEFCPVLLNQFMSRKYVKFEVFDAALDEFYSKIETQRSEQQQKTKENSAFQKLSKIRLDQENRAQTLKQEVDRCVKMAELIEYNLDDVDAAILAVRVALAKGMSWGDLTRMVKEEKKSGNPVAGLIDKLYLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLSLNAYSNARRWYELKKKQESKQEKTVTAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHRPEQPVPPLTLNQTGCFTVCHSQAWDSKMVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGTHFNERRVRGEEEGMDEIKESGTVIEESDSDSEKESEDINTHMSRPPENSRDGPSSNNNRTISDTKASNALNDKFVGNNMTLNISDEDNVPDIKYVSSSQLEDLIDRALELGSAATGSKIYGHQTSQVDLEEEHNPENQKATAREKPYISKAERRKLKKGQKGIGAGVNVEQENEQLEENDAVVSQFEQNVHNTKPGSGKISRGQRGKLRKVKEKYADQDEEERSIRMALLAVSGFLLHVPTHDLCCSISNEILFMWNFYIADSDDAPKICYKCKKAGHLSRDCQEHPDENSNSHSNEGVEGHLCSRVDDGAKLDRVPMEEEDIHEIGEEEKEKLNDVDYLTGNPLPSDILLYAVPVCGPYSAVQSYKFRVKIIPGTAKRGKAAKTAMNLFSHMSETTSREKELMKACTDPELVSAIIGNVKITSAGLTQLMQKQKQGKKSNKAEN 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21414712 21423177 + Bpe018222.1 Bpe05g00809 104586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00809 1129 Pfam NFACT protein RNA binding domain 546 657 IPR008532 -
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 688 754 - -
Bpe05g00809 1129 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 35 1116 - -
Bpe05g00809 1129 Gene3D ibrinogen binding protein from staphylococcus aureus domain 13 164 - -
Bpe05g00809 1129 SMART c2hcfinal6 953 969 IPR001878 GO:0003676|GO:0008270
Bpe05g00809 1129 SUPERFAMILY Retrovirus zinc finger-like domains 949 972 IPR036875 GO:0003676|GO:0008270
Bpe05g00809 1129 Pfam Zinc knuckle 953 968 IPR001878 GO:0003676|GO:0008270
Bpe05g00809 1129 Pfam NFACT N-terminal and middle domains 233 535 - -
Bpe05g00809 1129 Pfam NFACT N-terminal and middle domains 53 162 - -
Bpe05g00809 1129 PANTHER - 35 1116 - -
Bpe05g00809 1129 Coils Coil 369 389 - -
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 966 986 - -
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 875 899 - -
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 688 728 - -
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 729 754 - -
Bpe05g00809 1129 Pfam NFACT protein C-terminal domain 1014 1106 IPR021846 -
Bpe05g00809 1129 Gene3D - 947 999 - -
Bpe05g00809 1129 ProSiteProfiles Zinc finger CCHC-type profile. 954 969 IPR001878 GO:0003676|GO:0008270
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 201 220 - -
Bpe05g00809 1129 MobiDBLite consensus disorder prediction 185 231 - -
Bpe05g00809 1129 Coils Coil 853 873 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00809 K24971 NEMF, RQC2; nuclear export mediator factor NEMF - vvi:100267050 1527.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00809 Bpe-Chr5:21414712 Bpe07g00586 Bpe-Chr7:12399160 3.16E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00809 Bpe_Chr05 FPKM 0.0 0.0 1.037487 2.11733 15.782675 12.835948 16.686203 20.579433 19.930944 20.448757