Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00817 ATGGATAGTATGGTTCAAGGAATGCTTGTTGGTTCGGAGATTCATGGATTTCATACATTGAAAGACTTTGATATGAGAAACATTATGGATGAAGCAAAAATGAGATGGCTCCGGCCCAATGAAATTTATGCCATACTTTGTAATCACAGATACTTCAACATCAATGTCAAACCATTGAACTTGCCCCCGGTTTCCTTTAAGATCAAACTTTTTGTGTTATCTGCCTATTTTGATAGATTACTTTCACTAACTGAATCAGGTGGTACGATAAAATTATTTGATCGTAAGATGCTTAGGAACTTTAGGAAAGATGGTCATAACTGGAAAAAGAAAAAGGATGGGAAGACAGTCAAAGAAGCACATGAGCACCTAAAAGTTGGTAAGGAAGAAAGGATTCATGTATATTATGCACATGGACAGGATGCTCCAACCTTTGTCCGTCGGTGCTATTGGCTTCTTGATAAGAGTCTAGAACATATAGTTCTTGTTCATTACCGTGAAACACAAGAGGTTCGTTTTATATTTTTTTATCAACTGTTATTGAACTATGGCAAAGTCTGTTTTGACCAGCAGAATCGAGTTGCAGTGAATGATTCCACAAATGGAAATTTATTGGTGGAACGATCTACATTTGACGATATAAGTGGTTCAATTGGGAGATATAACACAAGTTATTTGGGTTCACCAAACAGCACCTACATATCTACAGCGGTTAGTCAATTGAATTCAAATGCACAGAAAGGGAATTTCATTGCAATGGCCTCCAATGATTCCTCAGGTATTGGGGGCCACGAGGGTTTGCAAAGTCAGGATAGTTTTGGGCGGTGGTTAAATATTTTGATTACTGGATTCTTTCATGACGAGTTTGCTCATCTAGCTAAATCCAGTTTGTTTTGTGTCTGCGGTGATGTTTGTATTCCTACAGAAGTTGTTCAACTTGGAGTATATCGGTGTCTGGTACCACCACATCCTCCTGGCTTTGTAAATCTCTATCTCAGTTTAGATGGTCAAAAACCAATCAGCCAAGTTCTGAATTTTGAGTATCACAGCAAATTACTGGATGGCTCAGAAGTTTGTTTAGAAGAAAAAGACAGATGGAAGGAGTTCAGCACGGACTTCGATGCCCAAGGTCAAGGAGTAATTCATTTATGTGCCATTCTGGGATATTCATGGGCTATACAGTTATTTGCTTGGTCAGGTTTAACATTGGATTTTCGGGATAAATTTGGATGGACAGCTCTTCACTGGGCAGCATATTGCGGCAGGGAGAAAATGGTTGCAGTTCTTCTATATGCTGGAGCAAAGCCGAACTTGGTCACAGACCCAACCCCAGAAAATCCTGGGGGATTCACAGCTGCTGATCTTGCATCGTCCAAGGGTCATGACGGCTTGGCTGCCTATCTTTCAGAAAAGGCTTTAGTATCACATTTTCAGGAAATGAGTATAGCTGGGAATATCAGTGGTACACTGCGAACCAGCACAACTGAGAAGGAGAGTGCAAACTCTGAGAACCTCCTAGAGGAGCAGCTATATATGAAAGATAGTCTGGCAGCTTACACAACAGCTGCCAATGCAGCAGCACGTATACAGGCTGCATTTCGTGAACATTCTTTCAAGCAAAGATCTAAAGATGTTCGGATTTCAAATCGAGAGATTGAAGCCCGCAATATTATTGCAGCAATGAAAATTCAGCATGCATTCCGTAATTATGAAATGCGACGGAAAATGGCAGCAGCTGCTCGTATACAACACAGATTCCGTACTTGGAAATTGCATAAAGATTTCCTTAACATGCGACGTCAAGCTATCAAAATTCAAGCTGCATTCCGAGGTTTTCATGTGTGGAGGCAATACCGTAAAATTGTTTGGTCGGTAGGAGTTCTCGAGAAAGTTATACTACGATGGCGATTGAAGAGAAAAGGCTTTCGTGGACTTCAAGTTGAACCCATCGAATCCCTTGCCGAGCAGAGACAGGAAAGTGATACGGAGGAGGATTTTTATCGCACGAGCCAGAAACTTGCAAGTGAACGTGTTGAGAGATCCGTAGTACGAGTTCAGGCCTTGTTTCGTTCAAAGAAAGCACAAGAAGATTACCAGAGGATGAAGATCGCCCATCTGGAAGCGAAGGTAAGTTATACACACAGGAGACGAATGCTAAAATCAACTTCGAATTAA 2175 41.1 MDSMVQGMLVGSEIHGFHTLKDFDMRNIMDEAKMRWLRPNEIYAILCNHRYFNINVKPLNLPPVSFKIKLFVLSAYFDRLLSLTESGGTIKLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGKEERIHVYYAHGQDAPTFVRRCYWLLDKSLEHIVLVHYRETQEVRFIFFYQLLLNYGKVCFDQQNRVAVNDSTNGNLLVERSTFDDISGSIGRYNTSYLGSPNSTYISTAVSQLNSNAQKGNFIAMASNDSSGIGGHEGLQSQDSFGRWLNILITGFFHDEFAHLAKSSLFCVCGDVCIPTEVVQLGVYRCLVPPHPPGFVNLYLSLDGQKPISQVLNFEYHSKLLDGSEVCLEEKDRWKEFSTDFDAQGQGVIHLCAILGYSWAIQLFAWSGLTLDFRDKFGWTALHWAAYCGREKMVAVLLYAGAKPNLVTDPTPENPGGFTAADLASSKGHDGLAAYLSEKALVSHFQEMSIAGNISGTLRTSTTEKESANSENLLEEQLYMKDSLAAYTTAANAAARIQAAFREHSFKQRSKDVRISNREIEARNIIAAMKIQHAFRNYEMRRKMAAAARIQHRFRTWKLHKDFLNMRRQAIKIQAAFRGFHVWRQYRKIVWSVGVLEKVILRWRLKRKGFRGLQVEPIESLAEQRQESDTEEDFYRTSQKLASERVERSVVRVQALFRSKKAQEDYQRMKIAHLEAKVSYTHRRRMLKSTSN 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21459888 21466893 - Bpe018229.2 Bpe05g00817 104594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00817 724 Gene3D Immunoglobulins 270 350 IPR013783 -
Bpe05g00817 724 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 278 371 - -
Bpe05g00817 724 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 371 714 - -
Bpe05g00817 724 Gene3D - 351 472 IPR036770 -
Bpe05g00817 724 Gene3D - 574 622 - -
Bpe05g00817 724 ProSiteProfiles IQ motif profile. 679 707 IPR000048 GO:0005515
Bpe05g00817 724 ProSiteProfiles IQ motif profile. 598 622 IPR000048 GO:0005515
Bpe05g00817 724 Pfam CG-1 domain 87 167 IPR005559 GO:0003677
Bpe05g00817 724 ProSiteProfiles IQ motif profile. 559 585 IPR000048 GO:0005515
Bpe05g00817 724 SMART iq_5 597 619 IPR000048 GO:0005515
Bpe05g00817 724 SMART iq_5 555 577 IPR000048 GO:0005515
Bpe05g00817 724 SMART iq_5 677 699 IPR000048 GO:0005515
Bpe05g00817 724 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 172 - -
Bpe05g00817 724 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 278 371 - -
Bpe05g00817 724 ProSiteProfiles Ankyrin repeat region circular profile. 409 437 - -
Bpe05g00817 724 ProSiteProfiles Ankyrin repeat profile. 409 441 IPR002110 GO:0005515
Bpe05g00817 724 SMART ANK_2a 448 477 IPR002110 GO:0005515
Bpe05g00817 724 SMART ANK_2a 409 438 IPR002110 GO:0005515
Bpe05g00817 724 Pfam Ankyrin repeats (3 copies) 371 438 IPR002110 GO:0005515
Bpe05g00817 724 SUPERFAMILY Ankyrin repeat 373 471 IPR036770 -
Bpe05g00817 724 SMART CG_1_2 28 169 IPR005559 GO:0003677
Bpe05g00817 724 ProSiteProfiles CG-1 DNA-binding domain profile. 25 174 IPR005559 GO:0003677
Bpe05g00817 724 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 371 714 - -
Bpe05g00817 724 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 17 172 - -
Bpe05g00817 724 SUPERFAMILY E set domains 278 348 IPR014756 -
Bpe05g00817 724 ProSiteProfiles IQ motif profile. 522 551 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00817 K21596 CAMTA; calmodulin-binding transcription activator - twl:119997831 505.753
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01108 Bpe05g00817 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00817 Bpe-Chr5:21459888 Bpe05g00947 Bpe-Chr5:22392835 8.63E-07 dispersed
Bpe04g01108 Bpe-Chr4:8924832 Bpe05g00817 Bpe-Chr5:21459888 5.54E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00329 . 1 1067 CAMTA Transcription Factor Family AT5G64220 50.7 5.3e-254 874.4
Bpe05g00817 CCT 24 169 CAMTA Transcription Factor Family AT5G64220 51.4 1.8e-36 151.8
Bpe04g01108 CCT 12 900 CAMTA Transcription Factor Family AT3G16940 53.5 1.4e-257 885.9
Bpe12g00329 . 18 158 CAMTA Transcription Factor Family AT3G16940 54.6 7.5e-38 156.0
Bpe04g01108 CCT 1 625 CAMTA Transcription Factor Family AT4G16150 52.6 3.0e-192 669.1
Bpe12g00329 . 1 1067 CAMTA Transcription Factor Family AT5G64220 50.7 5.3e-254 874.4
Bpe05g00817 CCT 24 169 CAMTA Transcription Factor Family AT5G64220 51.4 1.8e-36 151.8
Bpe04g01108 CCT 1 625 CAMTA Transcription Factor Family AT4G16150 52.6 3.0e-192 669.1
Bpe04g01108 CCT 12 900 CAMTA Transcription Factor Family AT3G16940 53.5 1.4e-257 885.9
Bpe12g00329 . 18 158 CAMTA Transcription Factor Family AT3G16940 54.6 7.5e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00817 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00817 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00817 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00817 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00817 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00817 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0