Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00830 ATGAATCCAAACTCTTCTTGTTCTCCAACGTTGAATCTATCCCCCGGCGACAATAAACCAGGCCTCGATTTGATAAGGGCGATTGTAGTTTTGATCAACCGTTACATTCTCGAGTTCTTGACAAATAGCAAAACAAGGAGTTTGCTGAAATTGAAATGTGCTTCCAAGTTAAGCAATCAAAAGCACGAGTTCTTCGAATTCTCCGACCAGTCGGTTCTGTCAAATCTTTACTGGGGCATTGAGAATATGGAAGCTGCAATTCATGCCGATACGGAGGAAGAGAGAGCATCCCGGCTGAAGAACTCAGAGCAAATGCTTCAGGTCCCAGCACTTCTCAACGAGCAAGAACTAACTGTTGGAGTTCCAAACAGTTACTTAGTTTGCTGTTCTTACTTTTACCTTTCAATGGTGAAGAAGCTTCAGATGAATGAGTTGCAGGTTGCTCTGCATTTCCTCCAAGCTCTAATGGTGTCTCCAAAGTTAATTGAGGAAGAATTTGCTCCAGAGCTATGCAGTAGTTTTCTCTCATCAAACTGGGAAGAACTCAGAGAAAGATTCAGTGTTGAAGAACATGTTAAAGCAATGAGGAAGATGGCAAGAACATGCAAGAAATGGTTGATGTATTATCAGGTTATATTACATGGAGAATCTCCAATTTGGCACAAGAAATTGAGAGGTTCTTTGTCCGATGAGCAAGAGCAGCAATGCCTGATGAATAGAGTATTCCACAGTGCAGAAACTTCTGATTCCAGTGGAGATGGACAGCCCTCAAAAAGTGCTTACCAATGTGAGAAGGTCCATCCACTCGATCCCATCAAGTCAATGGATGACATCACCGACGAACAAAGCCGATCAACAGGTTTCCCAGGATTTGATGACTATATGTATTCTCCCAAATCATTGTATCAAGATTCAAATTTCAAAAAGGGCCCAAAAATAATTTCAAGTATGAAAAGCCTCCAGGGTATGGTGAACGAAATGAAGTCTACTTCTGAAAGTGAAAGCCATGAAGATGAGGTTTGTTCAAAATCCATTTCAAACCAAAAGCGAAAAGCTACTCCTTTTCCGAGATGTCTACAAAAAAGTATTCAAGAACAAGATATCAAAGTACAAGTAACTGAACTATTTACCAGCGCCATAACCGATTCCAGCATATTTAGCTGGGACCATATAGAGGAAAAAACTGGTATTTTAAGTAATTGTCGCGTCGAAAATGAACTAACATGGCGGGAAACGAAAGTCAACAACTTCCAGCTCTTGGATCATGCCCAAGCTATGTCTCTCAAGAACTGCAGGGCCAAACAGATGAATCACCAGAAAATTGGTTTGAGGAGAGTAAAGAGCACACACTGCCAGAGAAATATCGGTGAAGTTTATTCCTTTTCTGGAAAAAAATCGAAGAGTGAGTTATCGGGATTGGTGAGAAGGGCGATTTCAAAGCTAAGTTTCTCCGAAGAGATGGAAAAGTGGGATCAAGATTATGCTGTGGAAGTTTCAACGGTTTACACAATGTTGAACAGCAAAAGAGGAGTGAGATATAACAAGCTGAAGGAAGTAATCATAAATAAACTCGTAAGGGGAATTTCTACCTATAAAGAGGAGAAGATATTAAGAGTAGCTGTGTCGATATTGGTATCCATCATTTCCGCAAATGGCTCCGTCGTTGAAGATATCAAGAAGAACGGTTTACGGCTGTGCGATCTCGCGAGCGCGCTGAAGAAAAATGTGTACGAGGCGGCGATCCTTATCTATCTAATCAATCCAACTCCTTCAGAAATCAAGTCGTTAGAGCTTCTACCGACGTTGGTCGAAGTTGTGTGCGGTTCAAACGATTATCAGGAACGGCCGGCATCACTCCAGCTAACGCCGCCGACAGCGTCACTAATGATTATCGAAGTTCTGGTGACTGCATTTGACGACGCCACGAACAATAAGCACTTGGCTGCTCTCAGTTCTCCCACGGTTCTTTGCGGGCTTCTGGAATTCGCTACGATCGATAACGTCGAAGAGTTGATCTCTCTGGCCACAATTCTCGTAAAGTGCATTCAATTTGACGGAGAATGCAGAAAGTTTATGTCGGAATTCACTCCCGTCGCTCCGTTCATCTATCTCCTCAAATGTAACAGCGATCGGGCCATGTACATAGCGCTTGAATTTCTCCATGAAGCCCTTTGCATTCCAAGGTCATCGGCGGTTTCGTTGCTGCATAGGATTCAAAGAGAAGGAAGAAATGAATTGATGAACATACTAATGTTTTGTGTTAAACACCTCCAACCTGAGTATCAAATCTTGGGAGCAAGTTTGCTGATTCAACTATGCACAATGAACAGCAGCTCAAATACAAGCCAGTACAAAGAGGAGGCCATACAGACCCTCATCAGATCAGTGGGATCTGAAGAATGCTCCAATTCACAGCTACTCTCTGCTTTGATTTTATCAAATCTTGGAGGGACATATTCCTGGACCGGGGAATCCTATACAGTACCATGGCTGGTCAGAAAATCAGGATTGAGCTTCATCACTCACCAAAACACGATCAAGAATGTCAACTGGTCGGACCAAATCCTTCAGGATGCCGGAACGGACTTGTGGTCCGGCATGATTGCCCGAAGCTTTATTGAAGTTGGTATTCCGGTCTTCCGTGCCTTGGCAAATGGGTTAAAGAGCAAAATAAAGAAGGTTTCTAGAGACTGTCTTGTGGCAGTTGCATGGCTTGGATGTGAAATCGCACGGAGTCCGGAGAGCACGAGATGCTCGGCCTGTGAGATTTTGTTGGGTGGATTTGAGCAGTTTTTGCACCCCGGATCGGAACTCGATGAACGGCTTCTCGCTTGTCTCTGTATATATAATTTCACTTCAGGAAAAGGGATGCAAAATTTGATTCATTTCTCCGAAGGAGTGAGGGAATCGTTAAGACGTCTTTCGAGCGTAACCTGGATGGCGGAGGAATTGCACAAAGTAACACAGTACTTTCTGCCCAATAGTTCAAGAATATCATGTGTTCACACTCAAATCTTGGAGATGGGTATCCGTAGCTGTGGAGCTGTATGTTCTCTCATCTACTACAAAGGAATGTTGTGCAGCGGATACTCAGACGGCTCGATAAAGGTTTGGAATATCAGCAGGCAATCGAGCATCCTTATATGGGACGTAAAGGAGCACAAGAGGGCAGTCACATGCTTCACCCTTTCGGGTACCGGAGACAACCTTCTTAGTGGATCTGCAGATAAAACTATCCGGGTCTGGAGAATTGGTGAGAGGCAATTGGAGTGCATTGAAGTAATTACCTTTAAGGAACCAATTCAGCATATAGAATCATGTGGTCGCCTGATTTTTACTGTTACCCAGGGGCGAGGGGTGAAGGTGTTTGATACCACCAGAGAAGTCAAAGTCATTTGCAAGGATAAGCAAGTGAAATGCATAAAGGCTACTCAGGGTAAAATCTATGCAGGCTGCATGGACTCAAGCATACAGGAATTCTCGGTAACGAACAATCGAGAGCAAGAGATCAAAGCCCCATCGAAAAGTTGGAGAATTCTGTGCGATCCTATAAACACAATCTTCATATATAAAGATTGGCTTTTCAGTGCCAATTCAACGGTCCAAGGCTCACAATTGCAGGAATGGAGAAGACATTGCAAACCTCAGTTGTCGATTGCTACAAGGAAAGGAGAAACTTTGCAGGCAATGGAGGTTGTTGAAGACTTTATATACTTAATCTCCAGATCATCAACAAACATTCAGATTTGGTTGCGAAGAAGGCAGCATAAAGTAGGGAGAATTTCGGCTGGCAGCCGGATAACAAGTCTACTCACAGGCAACGACATCATTCTATGCGGCACAGATTCGGGTACAATTAAAGTACGTATCCTCAGATCGATCTGTTTCTTTGCATGTCATTTACTAGTTGATTGTATATGGTTTGAAATTTTACCATCTCCCAACAGGGCTGGATCCCCCTCTAGCAAGCAACCTTTTGAATCTTCAGCAAGAGAAACAATATTGGTTTGA 4011 43.21 MNPNSSCSPTLNLSPGDNKPGLDLIRAIVVLINRYILEFLTNSKTRSLLKLKCASKLSNQKHEFFEFSDQSVLSNLYWGIENMEAAIHADTEEERASRLKNSEQMLQVPALLNEQELTVGVPNSYLVCCSYFYLSMVKKLQMNELQVALHFLQALMVSPKLIEEEFAPELCSSFLSSNWEELRERFSVEEHVKAMRKMARTCKKWLMYYQVILHGESPIWHKKLRGSLSDEQEQQCLMNRVFHSAETSDSSGDGQPSKSAYQCEKVHPLDPIKSMDDITDEQSRSTGFPGFDDYMYSPKSLYQDSNFKKGPKIISSMKSLQGMVNEMKSTSESESHEDEVCSKSISNQKRKATPFPRCLQKSIQEQDIKVQVTELFTSAITDSSIFSWDHIEEKTGILSNCRVENELTWRETKVNNFQLLDHAQAMSLKNCRAKQMNHQKIGLRRVKSTHCQRNIGEVYSFSGKKSKSELSGLVRRAISKLSFSEEMEKWDQDYAVEVSTVYTMLNSKRGVRYNKLKEVIINKLVRGISTYKEEKILRVAVSILVSIISANGSVVEDIKKNGLRLCDLASALKKNVYEAAILIYLINPTPSEIKSLELLPTLVEVVCGSNDYQERPASLQLTPPTASLMIIEVLVTAFDDATNNKHLAALSSPTVLCGLLEFATIDNVEELISLATILVKCIQFDGECRKFMSEFTPVAPFIYLLKCNSDRAMYIALEFLHEALCIPRSSAVSLLHRIQREGRNELMNILMFCVKHLQPEYQILGASLLIQLCTMNSSSNTSQYKEEAIQTLIRSVGSEECSNSQLLSALILSNLGGTYSWTGESYTVPWLVRKSGLSFITHQNTIKNVNWSDQILQDAGTDLWSGMIARSFIEVGIPVFRALANGLKSKIKKVSRDCLVAVAWLGCEIARSPESTRCSACEILLGGFEQFLHPGSELDERLLACLCIYNFTSGKGMQNLIHFSEGVRESLRRLSSVTWMAEELHKVTQYFLPNSSRISCVHTQILEMGIRSCGAVCSLIYYKGMLCSGYSDGSIKVWNISRQSSILIWDVKEHKRAVTCFTLSGTGDNLLSGSADKTIRVWRIGERQLECIEVITFKEPIQHIESCGRLIFTVTQGRGVKVFDTTREVKVICKDKQVKCIKATQGKIYAGCMDSSIQEFSVTNNREQEIKAPSKSWRILCDPINTIFIYKDWLFSANSTVQGSQLQEWRRHCKPQLSIATRKGETLQAMEVVEDFIYLISRSSTNIQIWLRRRQHKVGRISAGSRITSLLTGNDIILCGTDSGTIKVRILRSICFFACHLLVDCIWFEILPSPNRAGSPSSKQPFESSARETILV 1336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21560373 21568673 + Bpe018243.1 Bpe05g00830 104607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00830 1336 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 358 1290 - -
Bpe05g00830 1336 Pfam WD domain, G-beta repeat 1051 1082 IPR001680 GO:0005515
Bpe05g00830 1336 Gene3D - 630 984 IPR011989 -
Bpe05g00830 1336 PANTHER OS04G0584500 PROTEIN 7 338 - -
Bpe05g00830 1336 PANTHER OS04G0584500 PROTEIN 358 1290 - -
Bpe05g00830 1336 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1051 1084 - -
Bpe05g00830 1336 SUPERFAMILY WD40 repeat-like 1022 1289 IPR036322 GO:0005515
Bpe05g00830 1336 SMART WD40_4 1125 1161 IPR001680 GO:0005515
Bpe05g00830 1336 SMART WD40_4 999 1039 IPR001680 GO:0005515
Bpe05g00830 1336 SMART WD40_4 1088 1124 IPR001680 GO:0005515
Bpe05g00830 1336 SMART WD40_4 1044 1083 IPR001680 GO:0005515
Bpe05g00830 1336 MobiDBLite consensus disorder prediction 1317 1336 - -
Bpe05g00830 1336 Gene3D - 1012 1200 IPR015943 GO:0005515
Bpe05g00830 1336 ProSiteProfiles Trp-Asp (WD) repeats profile. 1051 1084 IPR001680 GO:0005515
Bpe05g00830 1336 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 338 - -
Bpe05g00830 1336 SUPERFAMILY ARM repeat 590 972 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00830 - - - qsu:112013161 1350.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00830 Bpe-Chr5:21560373 Bpe08g00483 Bpe-Chr8:3134698 2.34E-76 dispersed
Bpe05g00830 Bpe-Chr5:21560373 Bpe10g00794 Bpe-Chr10:14091618 1.90E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g186 Blo01g00069 . . Bda08g00295 . . . Bma05g01030 . . . Cma14g01615 . Car14g01438 . . Cpe03g01357 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00830 . . . . . Cmo14g01653 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009269 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00830 Bpe_Chr05 FPKM 1.329412 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0