Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00831 ATGCCGGGGCCGACTCTGGAGATGGAACCCGTCGAGCCACAGTCCCTTAAGAAGCTCAGCTTCAAATCCCTTAAACGAGCGCTAGACCTTTTCTCTCCCATCCACTCTCATCTCGCTCCTCCTGATCTTGAGAGTAAGAAAATTCGTCTGAGCCACAAGATACATGTTGAGTACGGAGGAATTCAAAGCATGGCTAATCGACGAGCAACTTCAGATGTATCCGATAGAGGTCCACAATCTTCAGGGCCGCCTGATACTCTTGCTCTTCCTGGGCCAGATGACACTGGTAATGCGGAAAAGGGTGTAGTTCAAAATGCTTTGGTCGTTGGTCCAAGTATACAGCCAAAGACTCAGAGTGATGTTGGTCTTGCAGGCAGAAGCTCTGCAGTTGTTTCTGCATCTGGAGTATCTGAAAGATTATCCACGTCTGCAATTATTGAAAGAATTCCTAGCAAGTGGCCTCGTCCAGTGTGGCATCCACCATGGAAAAACTATAGGGTTATAAGTGGCCACTTGGGATGGGTGAGATCCGTTGCATTCGATCCAAGTAACACATGGTTTTGTACTGGCTCTGCAGATAGAACCATCAAGATATGGGATGTTGCTAGTGGGAAGTTGAAACTCACCTTAACCGGACATATTGAACAAATCCGAGGTCTCGCTGTCAGCAGCAAACACACTTACATGTTTTCCGCTGGAGATGACAAACAAGTGAAATGCTGGGATCTTGAGCAGAATAAGGTCATCCGGTCATATCATGGTCATTTAAGTGGTGTTTATTGCTTGGCCCTGCATCCTACTATTGATATTTTACTAACTGGTGGAAGGGATTCTGTCTGTCGGGTATGGGACATCCGTAGTAAAATGCAAATACATGCACTTTCTGGGCATGATAACACTGTCTGCTCAGTTTTTACTCGACCCACGGATCCACAAGTTGTGACTGGATCCCACGACTCTACCATTAAGTTTTGGGACCTGAGACATGGGAAAACTATGTCAACTCTGACACACCACAAGAAATCCGTGCGAGCAATGGCGCTTCATCCAAAAGAAAATTGTTTTGCATCTGCATCAGCTGACAATATCAAAAAATTCAACCTTCCAAATGGGGAGTTTTTACACAATATGCTCTCTCAGCAGAAGACTATCATCAATACCATGGCTGTGAACGAAGAAGGTGTTATGGCAACTGGAGGTGACAATGGTAGCTTATGGTTCTGGGACTGGAAAAGTGGCCACAATTTTCAGCAATCACAAACAATTGTGCAGCCAGGCTCACTGGATAGTGAAGCCGGTATATACGCAGCTGCATACGATCTGACGGGATCAAGGCTTATAACCTGTGAAGCTGACAAGACAATTAAAATGTGGAAGGAAGATGAGAATGCCACCCCAGAAACTCACCCCCTCAATTTCAAGCCCCCTAAAGATATCAGAAGATTCTAG 1449 45.55 MPGPTLEMEPVEPQSLKKLSFKSLKRALDLFSPIHSHLAPPDLESKKIRLSHKIHVEYGGIQSMANRRATSDVSDRGPQSSGPPDTLALPGPDDTGNAEKGVVQNALVVGPSIQPKTQSDVGLAGRSSAVVSASGVSERLSTSAIIERIPSKWPRPVWHPPWKNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQIRGLAVSSKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDSTIKFWDLRHGKTMSTLTHHKKSVRAMALHPKENCFASASADNIKKFNLPNGEFLHNMLSQQKTIINTMAVNEEGVMATGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYAAAYDLTGSRLITCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21569571 21575982 + Bpe018244.1 Bpe05g00831 104608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00831 482 MobiDBLite consensus disorder prediction 463 482 - -
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Bpe05g00831 482 ProSitePatterns Trp-Asp (WD) repeats signature. 271 285 IPR019775 -
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 293 IPR001680 GO:0005515
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 205 - -
Bpe05g00831 482 Gene3D - 149 482 IPR015943 GO:0005515
Bpe05g00831 482 SMART WD40_4 203 242 IPR001680 GO:0005515
Bpe05g00831 482 SMART WD40_4 161 200 IPR001680 GO:0005515
Bpe05g00831 482 SMART WD40_4 329 367 IPR001680 GO:0005515
Bpe05g00831 482 SMART WD40_4 287 326 IPR001680 GO:0005515
Bpe05g00831 482 SMART WD40_4 370 409 IPR001680 GO:0005515
Bpe05g00831 482 SMART WD40_4 421 459 IPR001680 GO:0005515
Bpe05g00831 482 SMART WD40_4 245 284 IPR001680 GO:0005515
Bpe05g00831 482 Pfam WD domain, G-beta repeat 205 242 IPR001680 GO:0005515
Bpe05g00831 482 Pfam WD domain, G-beta repeat 247 284 IPR001680 GO:0005515
Bpe05g00831 482 Pfam WD domain, G-beta repeat 163 200 IPR001680 GO:0005515
Bpe05g00831 482 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 247 - -
Bpe05g00831 482 CDD WD40 164 459 - -
Bpe05g00831 482 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 328 - -
Bpe05g00831 482 SUPERFAMILY WD40 repeat-like 157 459 IPR036322 GO:0005515
Bpe05g00831 482 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Bpe05g00831 482 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Bpe05g00831 482 PRINTS G protein beta WD-40 repeat signature 271 285 IPR020472 -
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 287 - -
Bpe05g00831 482 MobiDBLite consensus disorder prediction 64 81 - -
Bpe05g00831 482 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 10 482 IPR045241 GO:0000398
Bpe05g00831 482 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Bpe05g00831 482 PANTHER BNAA01G27690D PROTEIN 10 482 - -
Bpe05g00831 482 MobiDBLite consensus disorder prediction 61 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00831 K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1 - vvi:100248018 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00456 Bpe-Chr2:2984026 Bpe05g00831 Bpe-Chr5:21569571 6.73E-06 dispersed
Bpe05g00831 Bpe-Chr5:21569571 Bpe12g00020 Bpe-Chr12:196599 6.49E-13 dispersed
Bpe13g00342 Bpe-Chr13:11251842 Bpe05g00831 Bpe-Chr5:21569571 6.00E-07 dispersed
Bpe05g00831 Bpe-Chr5:21569571 Bpe02g01914 Bpe-Chr2:21112421 7.44E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00831 Bpe_Chr05 FPKM 0.0 1.079002 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0