Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00832 ATGTCGCGGAAAGGTTTAATGGAGCAAGATTTAAGTAAACTGGATGTAACAAAGTTGAGTCCAACGTCCAAGGAAGTTATATCCCGTCAAGCCACCATTAACATTGGCACCATTGGTCATGTGGCACACGGCAAGTCGACAGTTGTGAAAGCAATATCTGGTGTTCAGACTGTTCGTTTTAAAAACGAGCTAGAGCGTAACATCACTATCAAGCTTGGATATGCAAATGCAAAGATATACAAATGCGAAGATGATCAATGCCCTCGACCTTTGACATACAAGGCATATGGAAGTGGAAAGGAAGACAGTCCTTTATGTGATGTGCCTGGGTTTGAAAATTGCAGGATGGAACTTCTAAGACATGTGTCTTTTGTAGATTGTCCCGGTCACGATATTCTCATGGCTACCATGCTTAATGGAGCAGCAATTATGGATGGAGCACTTCTTTTAATAGCTGCAAATGAAAGCTGTCCCCAACCTCAAACTTCAGAGCACCTGGCTGCTGTTGAAATCATGCGCCTCCAACATATTATAATCCTTCAAAACAAAGTCGATCTCATTCAAGAAAATGTAGCCATCAATCAGCATGAAGCAATTAAAAAATTTATTAAAGGGACTGTAGCTGATAATGCTCCTATTGTTCCAATTTCTGCCCAGCTAAAGTATAATATCGATGTTGTTTGTGAATATATAGTGAAGAACATTCCCATTCCGGAGCGAAACTTTGTGTCCCCTCCAAACATGATTGTAATTCGATCATTTGATGTCAACAAGCCTGGATTCGAAGTTGATGAAATCAAAGGTGGTGTAGCCGGTGGAAGTATCCTTAGGGGTGTTTTGAAGGTGAACCAATATATTGAGGTTCGTCCTGGAATTGTTGTTAAGGATGAAAGTGGGAATATCAAATGCACACCAATATATTCAAGAATTGTTTCTTTGTATGCGGAGCAAAATGAGCTTCAATTTGCTGTGCCTGGTGGCCTCATCGGAGTTGGTACAACCATGGATCCCACTTTGACACGAGCTGATAGATTGGTTGGCCAGGTTCTTGGTGAAGTTGGATCGCTCCCTGAGGTTTTCGTTGAGCTTGAGGTTAATTTCTTCCTACTTCGACGACTTCTGGGTGTGAGAACGAAGGGCTCAGAAAGGCAAGGTAAGGTTTCAAAACTAGCCAAGGGGGAGATCCTAATGTTGAACATTGGATCTATGTCCACTGGGGCCCGCGTCCTTGCGGTGAAGAATGATCTGGCAAAGTTACAACTCACTTCTCCGGTTTGTACAAGCAAAGGGGAAAAAATAGCTTTGAGTCGACGAGTTGAGAAGCACTGGCGGCTTATTGGCTGGGGCCAGATTCAAGCAGGTACCACTCTTGAAGTTCCTCCCTCCCCCATTTAA 1395 43.08 MSRKGLMEQDLSKLDVTKLSPTSKEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDQCPRPLTYKAYGSGKEDSPLCDVPGFENCRMELLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIKKFIKGTVADNAPIVPISAQLKYNIDVVCEYIVKNIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQYIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLEVPPSPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21578980 21582631 + Bpe018245.1 Bpe05g00832 104609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00832 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Bpe05g00832 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Bpe05g00832 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Bpe05g00832 464 Gene3D Translation factors 357 456 - -
Bpe05g00832 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
Bpe05g00832 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Bpe05g00832 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Bpe05g00832 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Bpe05g00832 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Bpe05g00832 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Bpe05g00832 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Bpe05g00832 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Bpe05g00832 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 242 IPR027417 -
Bpe05g00832 464 Gene3D Translation factors 242 356 - -
Bpe05g00832 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Bpe05g00832 464 Gene3D - 30 240 IPR027417 -
Bpe05g00832 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
Bpe05g00832 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Bpe05g00832 464 CDD eIF2_gamma_III 357 451 IPR015256 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01137 Bpe-Chr4:10075951 Bpe05g00832 Bpe-Chr5:21578980 0 dispersed
Bpe05g00832 Bpe-Chr5:21578980 Bpe06g00480 Bpe-Chr6:16069561 5.62E-16 dispersed
Bpe05g00832 Bpe-Chr5:21578980 Bpe10g00430 Bpe-Chr10:11726824 1.50E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00832 K03242 - cpap:110819896 879.396