Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00850 ATGGCCAAAGTAAAACCCTCGAAGCCATTGCCGTCCTCCGACGAAGCCTTATCGGACGGCGACAGTTCTTCTGGCGAGGAGGATCGGGTCAACGAGCAGATCAACGAGGAGGACGAGGAGGAGCTTGAAGCAGTAGCTCGCTCTGCTGCTTCCGACGATGAGGAGGCCACTGATAATAACTCCCCCGGCCAGGAAGATGATTCTGGCGGCTCTGGTGGCGCTGACAACGCTGATGAAGAAGACGTAAGTGAAGAAAATGCTGAGTCTAATGCTGAGATTAGCAAGCGCGAAAGAAATAGACTTAAAGAAATGCAGAAACTCAAGAAACAAAAGATTCAGGAAATATTGGATGCACAGAATGCTTCTATTGATGCTGATATGAACAACAAGGGGGAAGGGCGCTTAAAGTATCTCCTACAACAAACAGAGTTATTTGCTCATTTTGCTAAAGGCGGTCAATCCTCTTCTCAAAAGAAATCAAAGGGGAGGGGTCGCCATGCTTCAAAAGTAACTGAAGAGGAAGAAGACGAAGAATGCCTTAGAGAGGAAGAGGATGGTTTGACTGGGACAGGGAACACTCGTCTGGTCACTCAACCCTCGTGTATTCAGGGAAAGATGAGAGACTACCAGCTTGCTGGATTAAATTGGCTCATTCGATTGTATGAGAATGGAATAAATGGAATCCTTGCAGATGAAATGGGGCTTGGTAAAACATTGCAGACCATCTCTTTGATGGGTTATTTGCACGAGTTCAGGGGAATAACTGGACCTCACATGGTAGTTGCTCCAAAATCTACTTTGGGAAATTGGATGAATGAAATTCGTCGTTTTTGTCCTGTTATACGTGCTGTCAAATTTCTTGGAAATCCTGATGAGAGGGCAAATATTAGAGAGAATTTGTTGGTTGCGGGGAAGTTTGATGTTTGTGTGACTAGTTTCGAAATGGCTATTAAAGAGAAGACTTGCTTGCGACGCTTTAGCTGGCGTTATATCATAATCGATGAAGCCCATCGCATCAAGAATGAGAATTCCCTCCTTTCAAAGACGATGAGGCTGTATAATACTAATTATCGTCTTCTAATTACAGGAACACCACTTCAGAACAATCTTCACGAGCTTTGGGCTCTTCTTAACTTCCTTCTTCCAGAGATATTTAGTTCTGCCGAAACTTTTGATGAATGGTTTCAGATATCTGGTGAAAATGACCAGCAAGAGGTTGTTCAACAACTTCATAAGGTCCTTCGACCTTTTCTTCTTCGAAGATTGAAATCCGATGTCGAGAAAGGGCTACCTCCAAAGAAGGAGACTATTCTTAAGGTAGGCATGTCACAGATGCAGAAACAATACTACAGAGCTTTATTGCAGAAGGACCTTGAAGTTGTTAATGCTGGCGGAGAAAGGAAGAGGCTCTTAAATATAGCTATGCAGCTCCGTAAATGCTGTAATCATCCTTATTTATTTCAAGGTGCTGAACCTGGCCCGCCTTATACTACTGGAGATCATCTTATCATCAACGCTGGGAAAATGGTTCTTTTGGATAAGTTGCTTCCAAAGTTAAAAGAGCGTGATTCTCGGGTTTTAATATTTTCACAGATGACAAGATTGTTAGACATTCTTGAAGACTATTTAATCTTTCGAGGGTATTTTTACTGTCGGATTGATGGCAATACTGGTGGAGAAGATCGCGATGCTTCCATTGATGCTTTCAATAGGCCTGGGAGTGAGAAGAATCCCCAAGTTGATTTGCAAGCACAAGATCGAGCTCACAGGATTGGACAGAAGAAAGAAGTTCAAGTATTCCGCTTTTGCACAGAGTACACTATTGAGGAGAAAGTTATAGAGAGGGCTTACAAGAAACTTGCCCTTGATGCCCTGGTGATTCAACAAGGACGATTAGCGGAGCAGAAAACTGTTAACAAAGATGAACTGCTTCAAATGGTGCGATTTGGTGCTGAAATGGTATTCAGTTCCAAAGATAGCACTATTACTGATGAGGACATTGATAGAATAATTGCGAAAGGAGAAGAGGCAACCGCTGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCAATCAAATTTAAAATGGACGACAATGCTGAACTCTATGATTTTGATGACGAGAAGGATGAGAGTAAGTTTGATTTCAAGAAAATTGTGAGCGAAAACTGGATCGAACCACCCAAACGAGAGCGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACATTGCGACAAGGTGGCCCAACCAAACCGAAGGAGCCGCGAATTCCTCGGATGCCGCAGTTGCATGATTTCCAGTTTTTTAACACTCAAAGATTAAGTGAGCTATATGAGAAGGAAGTGAGGTTTCTCATGCAAACTCATCAAAAGAATCAATTGAAAGACACAATCGATGTGGATGAGCCTGAAGATGGGGGTGATCCCTTGACTGCCGAAGAGCTGGATGAAAAGGAGCGCCTGCTAGAAGAAGGATTTTCTTCTTGGAGTAGAAGAGATTTCAATACATTCATCAGAGCCTGTGAAAAGTATGGTCGAAATGATATAAAAAGTATTGCTTCAGAGATGGAGGGGAAAACTGAAGAGGAAGTGGAAAGATATGCTAAGGTTTTCAAGGAGAGATATAAAGAATTGAATGAATATGATAGAATTGTTAAGAACATCGAAAGAGGAGAAGCCAGAATTTCACGCAAAGATGAAATTATGAAAGCCATTGGGAAGAAGTTAGATCGTTACAAGAATCCGTGGCTGGAATTAAAGATCCAATATGGTCAGAACAAAGGGAAGTTATACAATGAAGAATGTGACCGTTTTATGATATGCATGGTTCATAAACTTGGATATGGAAACTGGGATGAGTTGAAGGCTGCATTTCGAACATCGCCTTTGTTTCGCTTTGATTGGTTTATCAAGTCTCGGACGACCCAAGAACTTGCTAGAAGATGTGATACCCTAATACGATTGGTGGAAAAGGAAAACCAAGAATACGACGAGAGAGAAAGACAGGCCCGCAAAGAGAAGAAGCTTGCAAAGCGCACAACGCCATCCAAGCGGCCATCAGCTAGGCAGACTGAGAGCCCGTCGATAAAGAAAAGGAGGCAGTTATCGATGGATGATTATGTGGAGGTGAGCATTAACGAGGCTGTATATTTGTATACATCTTCAGCACTGAATATATGCATTTGA 3195 42.25 MAKVKPSKPLPSSDEALSDGDSSSGEEDRVNEQINEEDEEELEAVARSAASDDEEATDNNSPGQEDDSGGSGGADNADEEDVSEENAESNAEISKRERNRLKEMQKLKKQKIQEILDAQNASIDADMNNKGEGRLKYLLQQTELFAHFAKGGQSSSQKKSKGRGRHASKVTEEEEDEECLREEEDGLTGTGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVIRAVKFLGNPDERANIRENLLVAGKFDVCVTSFEMAIKEKTCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLIINAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFRGYFYCRIDGNTGGEDRDASIDAFNRPGSEKNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNAELYDFDDEKDESKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRFLMQTHQKNQLKDTIDVDEPEDGGDPLTAEELDEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNEYDRIVKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKRTTPSKRPSARQTESPSIKKRRQLSMDDYVEVSINEAVYLYTSSALNICI 1064
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21706595 21714465 + Bpe018263.1 Bpe05g00850 104627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00850 1064 Coils Coil 84 121 - -
Bpe05g00850 1064 SMART sant 828 877 IPR001005 -
Bpe05g00850 1064 SMART sant 930 991 IPR001005 -
Bpe05g00850 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 421 IPR027417 -
Bpe05g00850 1064 MobiDBLite consensus disorder prediction 999 1035 - -
Bpe05g00850 1064 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 740 830 IPR036306 GO:0003677|GO:0006338|GO:0031491
Bpe05g00850 1064 SMART ultradead3 202 394 IPR014001 -
Bpe05g00850 1064 MobiDBLite consensus disorder prediction 1 105 - -
Bpe05g00850 1064 SUPERFAMILY Homeodomain-like 831 881 IPR009057 -
Bpe05g00850 1064 MobiDBLite consensus disorder prediction 88 105 - -
Bpe05g00850 1064 Pfam SLIDE 885 995 IPR015195 GO:0003677|GO:0005634|GO:0006338
Bpe05g00850 1064 Pfam SNF2-related domain 219 486 IPR000330 GO:0005524|GO:0140658
Bpe05g00850 1064 Gene3D - 576 690 IPR027417 -
Bpe05g00850 1064 MobiDBLite consensus disorder prediction 149 192 - -
Bpe05g00850 1064 ProSiteProfiles SANT domain profile. 827 879 IPR017884 -
Bpe05g00850 1064 MobiDBLite consensus disorder prediction 730 761 - -
Bpe05g00850 1064 CDD SF2_C_SNF 507 603 - -
Bpe05g00850 1064 Gene3D - 431 575 IPR027417 -
Bpe05g00850 1064 CDD DEXHc_SMARCA1_SMARCA5 203 423 IPR044754 GO:0005524
Bpe05g00850 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 675 IPR027417 -
Bpe05g00850 1064 Coils Coil 985 1016 - -
Bpe05g00850 1064 PANTHER SNF2/RAD54 HELICASE FAMILY 574 1045 - -
Bpe05g00850 1064 Gene3D - 916 1019 - -
Bpe05g00850 1064 Gene3D - 199 430 IPR038718 -
Bpe05g00850 1064 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 383 IPR014001 -
Bpe05g00850 1064 Gene3D - 828 882 - -
Bpe05g00850 1064 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 10 576 - -
Bpe05g00850 1064 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 574 1045 - -
Bpe05g00850 1064 MobiDBLite consensus disorder prediction 72 87 - -
Bpe05g00850 1064 Pfam HAND 741 822 IPR015194 GO:0003677|GO:0006338|GO:0031491
Bpe05g00850 1064 Gene3D ISWI, HAND domain 729 827 IPR036306 GO:0003677|GO:0006338|GO:0031491
Bpe05g00850 1064 PANTHER SNF2/RAD54 HELICASE FAMILY 10 576 - -
Bpe05g00850 1064 SUPERFAMILY Homeodomain-like 883 1005 IPR009057 -
Bpe05g00850 1064 Gene3D iswi atpase 883 915 - -
Bpe05g00850 1064 CDD SANT 831 875 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00850 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - rcu:8262399 1799.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00850 Bpe-Chr5:21706595 Bpe14g01173 Bpe-Chr14:8776575 7.94E-137 dispersed
Bpe03g01105 Bpe-Chr3:30167231 Bpe05g00850 Bpe-Chr5:21706595 4.51E-21 transposed
Bpe04g00567 Bpe-Chr4:3591285 Bpe05g00850 Bpe-Chr5:21706595 5.11E-22 transposed
Bpe14g01153 Bpe-Chr14:8586680 Bpe05g00850 Bpe-Chr5:21706595 4.34E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21478 PF00176 SNF2_N 6.20E-71 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00850 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.409404 0.547239 0.412852 0.136225 0.0 0.0