Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00852 ATGTCTCTGAGGAGTATAATTCAGGACATGAGGTCTCGATCGCATCGGGTGGTCCAGGATGGCTTACCTCCCGCGGTGAAAGATGGTTTGGAGCAGAGCTGTTGGGCTTACATGCCTCAGGAGCTACTGCGGGAAGTTCTTATGCGAATTGAGGCATCTGAGGGTGCTTGGCCGCCGAGGAAGAGCGTTGTTGCTTGTGCTGGAGTGTGCCGGAGTTGGAGAGCTATTACTAAGGAGATCGTCAAAACTCCTGAAACCTCCGGAAAGTTGACGTTTCCGATCTCTATCAAGCAGCCTGGTTCAAGGGAGTCTCTTATCCAGTGCTTCATAAAACGAAACAGATCCACAAAAACTTATTGCCTTTTTCTCAGTTTAACTAGTGCCCTCACTGATGATGGGAAGTTCCTTCTTGCTGCACGCAAATGTAGACGACCTACATGTACAGATTATATCATCTCTATTCGGGCTGATGATATGTCAAAAGGAAGCAGCACCTATGTCGGTAAATTAACGTATGTGCTTAAATGGATGGACTGTCCTCAATTTAATGTAAGGTCCAACTTTCTCGGAACTAAGTTCACAATATTTGATGGACAGCCGCCCCATGCAAGTGCCAAGATCACAAAAAGTCGCTCCACTAGGCTTGTAAATTTGAAACAAGTTTCACCCAGAATTCCTGTAGGAAACTTCCCAGTTGCTCGCATCTCATATGAATTGAACGTCCTGGGTTCAAGGCAAGTAGGTCCAAGGAGAATGCAGTGCATCATGGACGCCATTCCTTCCTCCTCGATTGAACCTGACGGAGTGGCACCCACACAAACTGAGGCTTCACTTGGCCATGTTGAATTTTCCCCATCATTCCCATTTTTCCGGTCAAAGTCAATCAACTTGGATAACTCTGTCGCTGGACCTTTGGCCTGTCAGAAAGATGGAATGCTGGTTCTGAGAAACAAGAGTCCCAGGTGGCATGAGCAGCTACAATGCTGGTGTTTGAACTTCCATGGGCGAGTGACCATTGCTTCGGTGAAAAATTTTCAGTTAGTTGCTTCTCCAGAAAATGGACCTGAAGGACCAGAACATGAGAAAATAATCCTCCAATTTGGAAAAGTAGGAAAGGATTTATTTACAATGGATTATCGGTACCCAGTCTCAGCATTCCAGGCATTTGCAATCTGTCTTAGCAGCTTTGACACCAAGATCGCTTGTGAATGA 1212 45.96 MSLRSIIQDMRSRSHRVVQDGLPPAVKDGLEQSCWAYMPQELLREVLMRIEASEGAWPPRKSVVACAGVCRSWRAITKEIVKTPETSGKLTFPISIKQPGSRESLIQCFIKRNRSTKTYCLFLSLTSALTDDGKFLLAARKCRRPTCTDYIISIRADDMSKGSSTYVGKLTYVLKWMDCPQFNVRSNFLGTKFTIFDGQPPHASAKITKSRSTRLVNLKQVSPRIPVGNFPVARISYELNVLGSRQVGPRRMQCIMDAIPSSSIEPDGVAPTQTEASLGHVEFSPSFPFFRSKSINLDNSVAGPLACQKDGMLVLRNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPEGPEHEKIILQFGKVGKDLFTMDYRYPVSAFQAFAICLSSFDTKIACE 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21724757 21727458 - Bpe018265.1 Bpe05g00852 104629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00852 403 Pfam Tub family 97 398 IPR000007 -
Bpe05g00852 403 ProSitePatterns Tub family signature 1. 333 346 IPR018066 -
Bpe05g00852 403 PANTHER TUBBY-RELATED 1 403 - -
Bpe05g00852 403 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Bpe05g00852 403 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 403 - -
Bpe05g00852 403 SUPERFAMILY Tubby C-terminal domain-like 84 403 IPR025659 -
Bpe05g00852 403 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bpe05g00852 403 ProSitePatterns Tub family signature 2. 388 403 IPR018066 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 381 403 IPR000007 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 315 332 IPR000007 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 360 379 IPR000007 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bpe05g00852 403 PRINTS Tubby superfamily signature 333 349 IPR000007 -
Bpe05g00852 403 Gene3D Tubby Protein; Chain A 93 403 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00406 Bpe-Chr5:18452789 Bpe05g00852 Bpe-Chr5:21724757 9.79E-137 dispersed
Bpe05g00852 Bpe-Chr5:21724757 Bpe07g00349 Bpe-Chr7:2736000 2.85E-141 dispersed
Bpe04g01142 Bpe-Chr4:10497415 Bpe05g00852 Bpe-Chr5:21724757 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21480 PF01167 Tub 2.70E-99 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00852 K19600 - zju:107426905 637.876