Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00856 AGGTGTGATTTAGTCATATCTGCTAAGGGAAAGACACAGAAGATAGCTTCTGGTTTGCTGAATCCTTTTCTCGCCCACTTGAAGACAGCTCAAGAGCAGCTGGCCAAGGGGGGTTATACAATTATTCTTGAGCCTGATCCCAGCTGTAATGCAACATGGTTCACAAGAGGAACCGTGGAAAGATTTGTCCGCTTTGTGAGCACTCCAGAAATCTTGGAACGGGTGTACACCATTGAATCTGAGATCTTACAAACTGAGGAGGCAATTGCGATTCAAGAACATAATGAAGTAGAGATGAATAATGTAAGTCAATGTACCTATTTATTATTTCACTTTCATGCTTTGATAGGCAGCAGATCTGTAATAGATACTAGTGAGGAGAAAGCAATTGTTCTTTACCAGCCTGGTGTAAACTCTCCCGAAGCGAATGGATTTACAACAGCAGAGGAGAATTCAAAGATTAAGCTTATGAAAGTCCTGGAGGCACGTAAGTCTGTGCTCCAAAAAGAGCAAGGCATGGCTTTTGCTCGAGCAGTAGCTGCTGGGTTTCATGCTGATGACATGCCATCATTAATGTCATTTGCTGAATGCTTTGGAGCCTTACGATTAATGGATGCTGGTAGAAAATATACGGAGTTGTGGAAGAAAAAGCATGAAACTGGCCAGTGGTTTGAGATCAAAGCAGCTGATGCAATTCCATCCAGATCAGACTTCTCTCCCATGAATGCATCTGGGATCCGACTCACAGATGGAGCTAACAAGCAGAAAGAATATGGGGATGTCTGGGTTGAATCTCACAATGGGTTGTATGAAAAGCCATGCATGATGAATCAGCAGCCAACAGGCCACCAAGAGTATTTTCAAGGGCAATATCCCCCTCATATGTATCCTCCTTGGCCTAATCATTCTCCGCAAAGTTCATTACCAATATTTCAACCATATCCCATACAGGCCATGCCTTGCTATCAGAACTATGCTGGAAACATCCCATTTTTCCATCCACCTTATCCGATAGCTGAGGATCTGGGACTCAGTACTGGCAATGTTGATTCCGAAACTGGTGAAGTGGATTCTCCAAATGTAAGAGTAAGGAACATTAACTACATATCTTCAAGGAAACATGATTCAGGTGGAGAGGAATCTGAAACAGATGAGGAAGATGGAGAGTCAGAGATCAAAAATCCACTAACAAATAGGAAGAACTCTCTGGAATCCTCAAGAACAGGGAGAAACTCTGAAAAATTATCCAATCAATCTGGTAAATCTGACAAGGAAGCCAACATTTTGGAGGAGGCAAATGGGCATTGGCAAGCATTCGAAAACTTTTTACTCGGGGATGCAAATGAACACACTGTTCATAATGGTATGTTTGCTAAAGAAAATGAATGTAAAAGGAGACAGAAAAAGGTTGGAGATGATGCACTGGTTTTTGTTCAGCGTGATACAGATGAAATCCATGAAGGAATAATAACAGGCATGGATGGAATAAGTGGAAAAGTCAGTTGCATTCTTCAGTCAACGAATGATGAGTCGGTGATTCTGGAAAAGGGAAGTTTATATAGTAATGGTTGGTCAGTGGATGGTCGTGCTGATGTTCAACATTCAGAGCTAGAAGGCAGAAGAAGTAGCTACAAGCAGACAAGCAACAATGATTTTATGGTCCATGGTCAAAAAAATTTTGTGACTTCTCCCTCAGATCCCTTGGTTATAAATGAGTTTGGTCATAGACCAAACAACTTGGATAGGCAGTCCACAAACTATATCAATGATTCCTATATAGTTTCATTGAAGTCTTCTTCATTGAATCAAGTTGAAAATGGAGGCCAAGATGCAATTGACATGGATTCTGAGTTCCCATCTGCTGCTCTTGACAGTAAAAATATATTCAACAGAGTTGCTAGTCAGTTGAATTATGCACCTAATGAATTAAGCATGATGCCGGAGCGAGGGACAGAGAAGAGGTCAACTGGTTATGATCATGCTCTAGGTTATGAAATGCAGATCCAGGTTGTAATGTCTGATTCTAAGAAAGAATCTAAAAAGTTGGACAGGGAACGAAAATCAAAACCCGTTGTCAATGCTTCTGATAAGAGGAAGACTGGAGGTCCAATCAGACGAGGAAAACCTTCAAAACTAAGTCCTCTAGATGAAGCACGAGTTCGTGCTGAGAAGCTAAGAAGATATAAAGCTGATCTCCAGAAGATGAAGAGAGAGAAGGAAGAGGAAGAATTTAAAAGGCTCGAAGCATTGAAGATGCAGAGGCAGAAGAGAATTTCTGTTAGAGGCAGTTTTACATCTCCTCAACCATCTATTCCCTCTCACCAGACCAGGAAGCATGTGCCAACAAAACTCTCCCCAAGCTCTCTCAAAGGATCAAAATTTACTGATTCAGAGCCTGGATCATTATCACCTCTACAAAGATTTACCAGAAAAAATACACCCATTGGCTCAATTGCTTCAAAGAAAGCTTATAAAACTAGCAGAGCAAATACAGAAAGTGACTTGCCTGGTCATCGGCTAAGTCGGTCAGTATCTTCATTGCCTGAACCGAAGAAAGAGAATGGTAGTGTGACACATGGTAGCAAGGCATCAATGGCGCACATAAGAAGATTATCAGAGCCTAAGACAAGCAGCATGAAAAACATTTCCTCTGTGAAGATGCAGACCATTGAGCCATTGTCAAAGCAAAAAAAGATCAATGACTTTGAGAAGAAGAAAATATCTGCTATAGTGAATCATGATAGGAGCAAGGCTACAACACTTCCGGAACTTATAATTAGAACATCCAGAAAACCTGATATCGCATTGAGTGGTCCACTTGTAAAAGAAACGGCACAAAACATCAGTTCTTTGACCTCTGAAGGTGCTCATATTGAGAGTAGAAATGCCATTTCTCACCACAGTGAAGCGGATGACAACCCAGTGATTGATAAAACTGTATTGATGTTAGAATGTGGGTACGGGAAGCCCATTGATGTGAAAGACCATGCATTAGATGAAAAGCTTCAGAAGAGTGCTGATATAGAATGCATTAAAGACCCATCCCCTGATCTGCCCTTTTCCTATGAGCAGTTCTGTTTTATCCAAGGTTTTTCTGATGCACAGATTACATTGAGCAATGCAGAGAAGGAAACTCCAAAATTTTCAACTGCCGGAGCTGCTGAAAAACCCTATATTGCTCCTTATGCTCGCGTTTCTTCTTTGGAAGATCCAAGTACACGTAGTTCAGATTATGGTAAATCTCCTCCCATAAACTTGGAATTTGTGGCTCCAAATAGTGGAAGTAAAGCACATGTTTCAAGTTTTGGTAACTCAAAACAAGGAAAGGTTTCAGAAGCAATTAAGAAGCCTGAGGTAAAGGAAACTTTAAAAGGATTTAAGCGGTTGCTGAAGTTTGGAAGAAAGAGTTTTAGCCCATCTAAAGGTGAACATAACATGGAATTAGATAATATGAGCACTTATGGTTGTGAGGCCGTTGATTCCGAGACAAATACTAATGTTTCTAATGAAGGTAAATTTGCTTAA 3525 40.74 RCDLVISAKGKTQKIASGLLNPFLAHLKTAQEQLAKGGYTIILEPDPSCNATWFTRGTVERFVRFVSTPEILERVYTIESEILQTEEAIAIQEHNEVEMNNVSQCTYLLFHFHALIGSRSVIDTSEEKAIVLYQPGVNSPEANGFTTAEENSKIKLMKVLEARKSVLQKEQGMAFARAVAAGFHADDMPSLMSFAECFGALRLMDAGRKYTELWKKKHETGQWFEIKAADAIPSRSDFSPMNASGIRLTDGANKQKEYGDVWVESHNGLYEKPCMMNQQPTGHQEYFQGQYPPHMYPPWPNHSPQSSLPIFQPYPIQAMPCYQNYAGNIPFFHPPYPIAEDLGLSTGNVDSETGEVDSPNVRVRNINYISSRKHDSGGEESETDEEDGESEIKNPLTNRKNSLESSRTGRNSEKLSNQSGKSDKEANILEEANGHWQAFENFLLGDANEHTVHNGMFAKENECKRRQKKVGDDALVFVQRDTDEIHEGIITGMDGISGKVSCILQSTNDESVILEKGSLYSNGWSVDGRADVQHSELEGRRSSYKQTSNNDFMVHGQKNFVTSPSDPLVINEFGHRPNNLDRQSTNYINDSYIVSLKSSSLNQVENGGQDAIDMDSEFPSAALDSKNIFNRVASQLNYAPNELSMMPERGTEKRSTGYDHALGYEMQIQVVMSDSKKESKKLDRERKSKPVVNASDKRKTGGPIRRGKPSKLSPLDEARVRAEKLRRYKADLQKMKREKEEEEFKRLEALKMQRQKRISVRGSFTSPQPSIPSHQTRKHVPTKLSPSSLKGSKFTDSEPGSLSPLQRFTRKNTPIGSIASKKAYKTSRANTESDLPGHRLSRSVSSLPEPKKENGSVTHGSKASMAHIRRLSEPKTSSMKNISSVKMQTIEPLSKQKKINDFEKKKISAIVNHDRSKATTLPELIIRTSRKPDIALSGPLVKETAQNISSLTSEGAHIESRNAISHHSEADDNPVIDKTVLMLECGYGKPIDVKDHALDEKLQKSADIECIKDPSPDLPFSYEQFCFIQGFSDAQITLSNAEKETPKFSTAGAAEKPYIAPYARVSSLEDPSTRSSDYGKSPPINLEFVAPNSGSKAHVSSFGNSKQGKVSEAIKKPEVKETLKGFKRLLKFGRKSFSPSKGEHNMELDNMSTYGCEAVDSETNTNVSNEGKFA 1174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21748732 21778109 + Bpe018269.1 Bpe05g00856 104633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 847 861 - -
Bpe05g00856 1174 PANTHER COP1-INTERACTING PROTEIN-LIKE PROTEIN 1 1168 - -
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 675 703 - -
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 349 424 - -
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 675 717 - -
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 758 840 - -
Bpe05g00856 1174 PANTHER COP1-INTERACTING PROTEIN-RELATED 1 1168 - -
Bpe05g00856 1174 Coils Coil 715 757 - -
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 395 416 - -
Bpe05g00856 1174 ProSitePatterns Tpx family signature. 1015 1026 IPR018219 GO:0016684
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 754 864 - -
Bpe05g00856 1174 MobiDBLite consensus disorder prediction 349 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00856 - - - qlo:115995145 1068.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00856 Bpe-Chr5:21748732 Bpe08g01035 Bpe-Chr8:12583431 2.19E-51 dispersed
Bpe05g00856 Bpe-Chr5:21748732 Bpe10g00711 Bpe-Chr10:13521013 1.03E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g727 Blo01g00089 Blo12g00369 Bda03g00841 Bda08g00276 . . Bma04g00739 . Cmo08g01052 Cmo17g00154 . . . . . . . . . . . . . . Cla06g00675 Cam06g0725 Cec06g0732 Cco06g0741 Clacu06g0716 Cmu06g0701 Cre06g1472 Cone14ag0156 Cone15ag0168 . . . Csa02g01051 Chy05g00312 . . . . . Bpe05g00856 . . . . . . Cma08g01077 Cma17g00155 Car08g00950 Car17g00138 Cpe12g00133 Cpe17g00200 Bhi12g01604 Tan06g2399 . . . . Lcy13g0386 . . . . . . . Lsi09g01225 . . Cme05g00580
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003371 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 3 1 6 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00856 Bpe_Chr05 FPKM 44.187149 46.116638 50.191944 49.965881 48.253277 42.699818 48.137936 67.077827 66.981911 71.862358