Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00859 ATGGATACATCCCTCTTCCACTCCCGGAGTTCTGATTTCTTACCGGAATCTTACTCGGGTTCGCCGGAATACTTTTCTTCCGGGGCCACCACCTTTTTCCCTTTCAACGAAAACGACTCAGAAGAGATGCTTCTTTACAGCCTAATTTCTAGTCCGGAAAACATATTTCCCGAACAAATTCGAGAAGAAACGGATTCACTTTCCAAACCAAGCCCAGAAAAGTCATATAGAGGTGTGAGAAAGAGGCCATGGGGAAAATTCGCATCAGAAATAAGGGACTCGACCAGAAATGGAGTTAGAGTTTGGCTGGGGACGTTCGACAGTGCAGAAGCGGCGGCCATGGCTTACGACCAAGCGGCTTTTTCAATGAGAGGAACGGCAGCGATTCTCAATTTCCCAGCGGAGAGAGTACAGGAATCGCTTAGAAAGATGAACTGCGGCTCCGGGGATGGGTCTCCGGTGATTGCTTTGAAACAGGAGCACTGTTTGAGAAGAAGATCAATGAAGAAAAGGTTGAAAGAGAGAGAATGGGGTGATTTTTGA 543 47.15 MDTSLFHSRSSDFLPESYSGSPEYFSSGATTFFPFNENDSEEMLLYSLISSPENIFPEQIREETDSLSKPSPEKSYRGVRKRPWGKFASEIRDSTRNGVRVWLGTFDSAEAAAMAYDQAAFSMRGTAAILNFPAERVQESLRKMNCGSGDGSPVIALKQEHCLRRRSMKKRLKEREWGDF 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21803648 21804190 - Bpe018272.1 Bpe05g00859 104636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00859 180 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Bpe05g00859 180 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Bpe05g00859 180 SUPERFAMILY DNA-binding domain 75 134 IPR016177 GO:0003677
Bpe05g00859 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 174 - -
Bpe05g00859 180 CDD AP2 74 134 IPR001471 GO:0003700|GO:0006355
Bpe05g00859 180 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Bpe05g00859 180 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Bpe05g00859 180 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Bpe05g00859 180 PANTHER DNA-BINDING DOMAIN 28 174 IPR044808 GO:0003700|GO:0009873
Bpe05g00859 180 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00859 Bpe-Chr5:21803648 Bpe14g01247 Bpe-Chr14:9403953 4.27E-58 dispersed
Bpe05g00859 Bpe-Chr5:21803648 Bpe05g00860 Bpe-Chr5:21814480 5.87E-28 tandem
Bpe14g01246 Bpe-Chr14:9398041 Bpe05g00859 Bpe-Chr5:21803648 4.67E-29 wgd
Bpe04g00797 Bpe-Chr4:5232236 Bpe05g00859 Bpe-Chr5:21803648 7.71E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21482 PF00847 AP2 1.10E-13 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00859 K14516 - csin:114283936 209.92