Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00880 ATGCAGGTCCCTAATTCTAAAGAAGATGCTCCTGAGATATTGGAAGGTGTTGAAGTGTCCGAAAAATTGAACTCCCCCAAGTTGAGTTTGGTTGGTGGTGGCGAATGTGATGTTGAGGATGATTCGGTTCTCGACGTTTCTGGAAAAATTTTGGACTTTCCTTTGGAGAAGAGTTTGGAAGATACGGTGAAGGGTTTGTATGTGTATAGAAACGTGTTTAATTTAATTCCGGAATCTCTCGGCAGATTAGGGCAGTTGAGGACGTTGAAGTTTTTTGGAAATGAGATTAATTTGTTTCCGTCGGAGTTGAAGAACTTGGTGGGGTTGGAATGCTTGCAGGTGAAAATGTCTTCACCGGGATTCGGTGGGTTACCCTTGCATATGATCAAGGGTCTGAAGGAGCTTGAGCTGTCTAAAGTGCCACCACGGCCTTCAGCTTTTCCCATTCTTAGTGAGATTACTAGTCTCAAGTGCTTGAAGAAGCTCTCTATATGTCACTTCTCCATAAGATTCCTTCCTTCAGAAATTGGCTGCTTAAATAATTTGGAGTTTCTAGATCTCTCCTTCAATAAAATCAAGACTTTGCCCTCTGAAATAAGTTATTTGAATGACTTGATATCATTGAAAGTTGCTCATAATAAATTGGTGGAATTACCATCAGCTCTGTCCTCCCTGCAAAAGTTGAAGAACTTGGACCTGTCAAATAATAGGTTGACTTCATTGGGATCTCTTGACCTTCCATCGATGCATAACCTTCAAAATCTTAATCTAAAGTTCAATAAGCTTCTGAATAATTCTAGCATACCTGCCTGGATATGCTGCCAATTAGGAGGAAATGGTGAATATACATCAAATGGTGGTTGTACAAGTTCTATTGTCGAAATGGATTTATATAATGAAAACAATGACAAGAGTGCAAAATTTTCTCACAAAGGCACCCACCATACATTATCAAGTTTAGTGGGTGGACTTTCATCAAATGGTAGATGTTTTGCTACTCGAAGGTCAGGTAGAAGGTGGAAGCGACAATATTATTTACAGCAGAAAGCTCGTCAAGAACGTTTAAATAACAGTAGGAAATGGAAAGGAGTAGATCAGTCTGACATTTTGTCGGTTGGGCAGAATGAAAATTACCAGGCTTTCAGTTTAAACACCCTTTCTTCTGACACTTGCGCAGAAGCTGCATCATCGATTGTTTGTCCCAATGATGATAATGCTTTACAATTTACAGATGCTGAAAATGATAACTCACTTGAAGGTCTTGAGAACAGTGAAGTCTGCTCTGAAGAAAAAGTTTCTGCAGAAAACTGTTGTTGCGTTGCAGCAAGTGAAGGTAGTGAAAATGACTGTTGTGAGAATGATTCATCTTTTTCCTCCATTCGCAAGAGTGGAGAAGAGCAAGATGATATTTCATCTCTAGAGACACCAATGAAATTTAAGTTTAAGAGGCCTTCTGAAAGGGATCTTGATAACCCAAAGCCATGCAAGTCTTGTAAACCTGCTAAAGATAGTTCAACACTATCGTGCAAGTATAGTAATATATCCTTTTGTACCACTGATGATTATCTACCGGATGGTTTCTATGATGCGGGACGCGACCGACCATTCATGTCAATGCAGAGCTATGAAGAAAATATCCACCTTGATGCACGGGAAGTTATTTATTTGGACAGAGACCGAGATGAAATGTTGGATGCTATTGTACTTTCTGCTCAGACAATGATGCAGCATTTAAAACAGATAAATGGTGTAACAAATGACGGGAATCAATCTAATGTTGATGATCTATTGACTGCTTCATTGCTTGCGATGTTTGTATCGGATCATTTTGGAGGCAGTGATAAAAGTGCAATTGTAGAAAGGACTCGGAAAGCTGTGTCTGGTTCTAACTACGAGAATCCTTTCGTTTGTACATGTTCAACTGGAAACAGGGGCTGGATGGACATGTCTGCTGTACCAATGAGGCATGTGGTGGAAGACTTAATTTTTTCAGATATGTGTGAAAAATCTCTGCAGTCTATTAAAGCTAGACGAAATTCCATAATTATTCCTTTAGGGGAAGTATCATTTGGCGTATGTAGACATAGAGCGTTGTTGATGAAGTATTTATGTGACCGAATGGAGCCTCCAATATCTTGTGAGCTAGTGAGGGGTTTCCTTGATTTTTCGCCGCATGCCTGGAATGTTATTCTAGTCAAAAGAGGCAATTCATGGGTTAGAATGATAGTTGATGCGTGTCACCCGCATGATATACGAGAAGAGGAAGATCAGGAATATTTTTGCAGGTACATTCCTCTTGGTCGCTCCAAAGTTCCAATTTCTCTTGGAGAGATGCACGGTCCTGGTTGTTCCTTTCCGTCTCTTTCGACTTTTGATAAAATTGAAAAATCAACTTCCAGTTCAGTTGTAAAATGCAAATTGGGATCCGTGGAGGCAGCAGCAAAGGTTCGTACTTTGGAAGTTCCTGTCTCTGCTGTGGATCAAATTAGGAAATTTGAGTATAGCTGGCTAGCGGAAGTAAGAATGTTAGGTGCTTTAAAACACTCATGCATAATAGAGATGTATGGACATCAGCTATCTTGCAAGTGGATTCCTTCTGTGGATGGAGAACCAGAACTTCGTCTCCTACAGTCTTCAATATTTTTAGAGTACATAAAAGGAGGATCGTTGAAGAGTTACATTGAGAAGTTGTCTAAGGCTGGGGAGAAGAGTGTTCCAGTTCACTTAGCGGTATGTATTGCTAGAGATGTTGCATGTGCTTTAGCAGCCATGCATTCGAGACATATCATACATCGTGACATAAAAAGTGAGAACATATTGATTGATTTGGATAAGAAGAGAGCTGATGGTTCTCCTTTAGTGAAGCTGTGTGATTTTGATAGAGCTGTCCCTCTTCGTTCTTCCTTGCACACCTGCTGTATTGCTCATTTTGGGGTACCTGCCCCAGATGTTTGTGTTGGAACTCCTCGTTGGATGGCCCCAGAGGTTCTGCAGGCAATGCATCGAGGCAATAAATATGGAGTGGAAGTGGATATATGGTCATTTGGATGCCTATTATTGGAACTATTGACACTGCAAATCCCATACTTGGAATTATCTGAGATGCAGTTTTGTGACCAACTTAAGATGGGAAAACGTCCACGATTGACCGATGAGCTAGAAACTTTGGTAACCTTAGACGACAGCTCAATAACTCGCTCTGATACTGATCGAAGCAAAAACTCAGAAGCCGAACTGAATGATCATAAATTCCTGATTGATCTATACCACCAATGTACACAGGAGAATCCTAGTGACAGGCCAACAGCTGATAATCTTTACGAATCATTGTCGGCAAGAACAACCAAGCTGTCTGGCTGA 3360 40.57 MQVPNSKEDAPEILEGVEVSEKLNSPKLSLVGGGECDVEDDSVLDVSGKILDFPLEKSLEDTVKGLYVYRNVFNLIPESLGRLGQLRTLKFFGNEINLFPSELKNLVGLECLQVKMSSPGFGGLPLHMIKGLKELELSKVPPRPSAFPILSEITSLKCLKKLSICHFSIRFLPSEIGCLNNLEFLDLSFNKIKTLPSEISYLNDLISLKVAHNKLVELPSALSSLQKLKNLDLSNNRLTSLGSLDLPSMHNLQNLNLKFNKLLNNSSIPAWICCQLGGNGEYTSNGGCTSSIVEMDLYNENNDKSAKFSHKGTHHTLSSLVGGLSSNGRCFATRRSGRRWKRQYYLQQKARQERLNNSRKWKGVDQSDILSVGQNENYQAFSLNTLSSDTCAEAASSIVCPNDDNALQFTDAENDNSLEGLENSEVCSEEKVSAENCCCVAASEGSENDCCENDSSFSSIRKSGEEQDDISSLETPMKFKFKRPSERDLDNPKPCKSCKPAKDSSTLSCKYSNISFCTTDDYLPDGFYDAGRDRPFMSMQSYEENIHLDAREVIYLDRDRDEMLDAIVLSAQTMMQHLKQINGVTNDGNQSNVDDLLTASLLAMFVSDHFGGSDKSAIVERTRKAVSGSNYENPFVCTCSTGNRGWMDMSAVPMRHVVEDLIFSDMCEKSLQSIKARRNSIIIPLGEVSFGVCRHRALLMKYLCDRMEPPISCELVRGFLDFSPHAWNVILVKRGNSWVRMIVDACHPHDIREEEDQEYFCRYIPLGRSKVPISLGEMHGPGCSFPSLSTFDKIEKSTSSSVVKCKLGSVEAAAKVRTLEVPVSAVDQIRKFEYSWLAEVRMLGALKHSCIIEMYGHQLSCKWIPSVDGEPELRLLQSSIFLEYIKGGSLKSYIEKLSKAGEKSVPVHLAVCIARDVACALAAMHSRHIIHRDIKSENILIDLDKKRADGSPLVKLCDFDRAVPLRSSLHTCCIAHFGVPAPDVCVGTPRWMAPEVLQAMHRGNKYGVEVDIWSFGCLLLELLTLQIPYLELSEMQFCDQLKMGKRPRLTDELETLVTLDDSSITRSDTDRSKNSEAELNDHKFLIDLYHQCTQENPSDRPTADNLYESLSARTTKLSG 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21947934 21954828 - Bpe018291.1 Bpe05g00880 104657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00880 1119 PANTHER BNAC08G43810D PROTEIN 64 1113 - -
Bpe05g00880 1119 ProSiteProfiles Leucine-rich repeat profile. 181 202 IPR001611 GO:0005515
Bpe05g00880 1119 PRINTS Leucine-rich repeat signature 182 195 - -
Bpe05g00880 1119 PRINTS Leucine-rich repeat signature 225 238 - -
Bpe05g00880 1119 ProSiteProfiles Leucine-rich repeat profile. 227 248 IPR001611 GO:0005515
Bpe05g00880 1119 ProSiteProfiles Protein kinase domain profile. 788 1117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe05g00880 1119 SMART LRR_bac_2 179 198 - -
Bpe05g00880 1119 SMART LRR_bac_2 202 221 - -
Bpe05g00880 1119 SMART LRR_bac_2 225 244 - -
Bpe05g00880 1119 Pfam Ethylene-responsive protein kinase Le-CTR1 662 744 - -
Bpe05g00880 1119 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 64 1113 - -
Bpe05g00880 1119 Pfam Protein kinase domain 827 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe05g00880 1119 Gene3D Transferase(Phosphotransferase) domain 1 786 1118 - -
Bpe05g00880 1119 SUPERFAMILY RNI-like 64 265 - -
Bpe05g00880 1119 SUPERFAMILY Protein kinase-like (PK-like) 787 1110 IPR011009 -
Bpe05g00880 1119 Gene3D Ribonuclease Inhibitor 42 303 IPR032675 -
Bpe05g00880 1119 SMART serkin_6 788 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe05g00880 1119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Bpe05g00880 1119 SMART LRR_typ_2 83 105 IPR003591 -
Bpe05g00880 1119 SMART LRR_typ_2 179 202 IPR003591 -
Bpe05g00880 1119 SMART LRR_typ_2 249 275 IPR003591 -
Bpe05g00880 1119 SMART LRR_typ_2 225 248 IPR003591 -
Bpe05g00880 1119 SMART LRR_sd22_2 179 204 - -
Bpe05g00880 1119 SMART LRR_sd22_2 225 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00880 - - - jre:108989468 1394.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00813 Bpe05g00880 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00880 Bpe-Chr5:21947934 Bpe02g00081 Bpe-Chr2:608986 2.50E-27 dispersed
Bpe02g01060 Bpe-Chr2:12877778 Bpe05g00880 Bpe-Chr5:21947934 5.01E-06 transposed
Bpe04g00813 Bpe-Chr4:5360058 Bpe05g00880 Bpe-Chr5:21947934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63364 PF00069 Pkinase 6.80E-39 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00880 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0