Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00882 ATGAATCTTCAAAGCCGAGTCAAGGAGGAGGTTCATGGAGAAACAATGTCATTTTTCGAAGAATTCCATTGTCCTCAAGCGATGAAGAGGTTTGAAGAAGCAGCTCCTCCGCCATTTTTAACCAAAACCTATGAAATTGTTGACGATCCAGCTACCAACCATGTGGTCTCTTGGAGCAGAGAAAATAACAGCTTTGTGGTTTGGGATATACAGAGCTTCTCTATGCATCTTCTTCCTAAATATTTCAAGCACAACAATTTCTCAAGCTTTGTCAGACAGCTCAATACCTATGGATTCAGAAAGGTCGATCCAGAAAGATGGGAGTTTGCAAATGAAAACTTTCTCAGAGGAGAAACACATCTCTTAAACAAGATATGGAGGAGGAAAGCTTCTTCTCAACACCAGGTTCTAAACCAAGCTTTGGATTCTTGTGCCAAATCTGGATGGTTCGGACACAATCAAGAAGACGATATATTCAAGCGAGAAAAGAGAGCTCTAACAGAGGAACTGACCAATATAAGACAGCAGAATCAGAGATTCAAAGCTTACCTCCTGACAATGGAAGACAGGTTAAGAAAAACGGAGACGAAGCAAACCCAGATGATGAGTTTCTTGGCTAGAGGACTGAAGAGATCAAAACTTGCAGAGCACATAGCTCAACAAGACAGAACAAAACAGCCTCGAGAAGAAAACACTAAAAAAAGGGGAAGCAGTATCCATCAATGGCCTGCAAAATTTGGAGTTGCAGAAATGGATCAAATAGAGGGAACAGACGAAAAAAAGTTCGTAAAAACTGAAAACTTTATCAGATTTGTGGAAGATGATTATGAATTTCTAGAGGTAACGGAGGTGGATGAGGTAGCCATGAAAATGGAAGATATAGGAGGGAGAATAGAGGAGGTGAGCGAAAAAAGAGACGTGGAAAGAGGAAAGATAAGTGTTACAAGGGATAAAGATGATCTCGACGATGGTTTTTGGGAAGAATTATTGAAGGGCTGTATCAAAGAATAA 1011 40.26 MNLQSRVKEEVHGETMSFFEEFHCPQAMKRFEEAAPPPFLTKTYEIVDDPATNHVVSWSRENNSFVVWDIQSFSMHLLPKYFKHNNFSSFVRQLNTYGFRKVDPERWEFANENFLRGETHLLNKIWRRKASSQHQVLNQALDSCAKSGWFGHNQEDDIFKREKRALTEELTNIRQQNQRFKAYLLTMEDRLRKTETKQTQMMSFLARGLKRSKLAEHIAQQDRTKQPREENTKKRGSSIHQWPAKFGVAEMDQIEGTDEKKFVKTENFIRFVEDDYEFLEVTEVDEVAMKMEDIGGRIEEVSEKRDVERGKISVTRDKDDLDDGFWEELLKGCIKE 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21960206 21961575 - Bpe018293.1 Bpe05g00882 104659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00882 336 MobiDBLite consensus disorder prediction 216 239 - -
Bpe05g00882 336 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe05g00882 336 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe05g00882 336 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 21 335 - -
Bpe05g00882 336 MobiDBLite consensus disorder prediction 216 236 - -
Bpe05g00882 336 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe05g00882 336 Gene3D - 31 130 IPR036388 -
Bpe05g00882 336 SUPERFAMILY Winged helix DNA-binding domain 35 128 IPR036390 -
Bpe05g00882 336 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe05g00882 336 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe05g00882 336 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bpe05g00882 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 335 IPR027725 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00882 K09419 HSFF; heat shock transcription factor, other eukaryote - qsu:112016413 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00882 Bpe-Chr5:21960206 Bpe06g00451 Bpe-Chr6:15890021 1.54E-79 dispersed
Bpe05g00882 Bpe-Chr5:21960206 Bpe07g00232 Bpe-Chr7:1653079 2.91E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g557 . . . Bda08g00255 . . . Bma05g01091 . . Cma06g01370 . Car06g01187 Car14g01574 Sed02g1342 . Cpe03g01464 Bhi01g00760 Tan10g0791 Cmetu06g1701 . Hepe05g1586 . Lcy11g1582 . . . . . . . . . . . Lsi05g01637 . . Cme06g00575 . . . . Bpe05g00882 . . . . . . . . . . . . . . . . . . . Cla05g00509 Cam05g0560 Cec05g0572 Cco05g0570 Clacu05g0557 Cmu05g0528 Cre05g0597 . Csa03g01291 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00451 . 38 238 HSF AT4G17750 53.7 1.7e-56 217.2
Bpe14g00264 . 39 225 HSF AT4G17750 54.7 1.3e-53 207.6
Bpe14g00850 . 13 211 HSF AT4G17750 52.3 8.5e-53 204.9
Bpe02g00432 BCT,CCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bpe05g00026 CCT 14 117 HSF AT4G17750 67.6 2.2e-37 153.7
Bpe04g00177 BCT,CCT 21 118 HSF AT4G17750 68.4 5.0e-37 152.5
Bpe05g00633 . 20 115 HSF AT4G17750 70.8 6.5e-37 152.1
Bpe07g00232 . 22 325 HSF AT5G16820 64.1 2.0e-91 333.2
Bpe05g00521 . 19 320 HSF AT5G16820 63.9 5.9e-91 331.6
Bpe06g00451 . 39 244 HSF AT5G16820 54.0 9.4e-57 218.0
Bpe14g00850 . 15 210 HSF AT5G16820 53.1 1.3e-53 207.6
Bpe14g00264 . 40 225 HSF AT5G16820 52.9 2.0e-51 200.3
Bpe05g00882 . 37 235 HSF AT5G16820 51.9 3.6e-48 189.5
Bpe07g00232 . 24 508 HSF AT1G32330 52.3 4.6e-112 401.7
Bpe05g00521 . 21 504 HSF AT1G32330 50.5 2.6e-107 386.0
Bpe14g00850 . 10 190 HSF AT1G32330 51.8 3.6e-48 189.5
Bpe02g00432 BCT,CCT 18 117 HSF AT1G32330 70.0 7.5e-38 155.2
Bpe04g00177 BCT,CCT 19 118 HSF AT1G32330 67.0 8.3e-37 151.8
Bpe05g00026 CCT 20 116 HSF AT1G32330 70.4 2.4e-36 150.2
Bpe06g00451 . 39 243 HSF AT3G02990 53.8 2.2e-58 223.4
Bpe14g00850 . 15 213 HSF AT3G02990 52.6 9.5e-54 208.0
Bpe14g00264 . 40 226 HSF AT3G02990 51.8 3.1e-52 203.0
Bpe02g00432 BCT,CCT 8 133 HSF AT3G02990 58.9 5.6e-38 155.6
Bpe02g01074 . 7 395 HSF AT4G18880 50.4 1.5e-95 346.7
Bpe14g00850 . 7 483 HSF AT4G13980 52.6 8.7e-124 440.7
Bpe14g00264 . 32 232 HSF AT3G22830 54.3 2.0e-60 229.9
Bpe05g00521 . 10 232 HSF AT3G22830 55.7 5.0e-59 225.3
Bpe07g00232 . 28 236 HSF AT3G22830 55.1 1.6e-57 220.3
Bpe06g00451 . 26 314 HSF AT3G51910 52.2 1.1e-67 253.4
Bpe13g01250 CCT 1 208 HSF AT3G51910 51.2 6.3e-50 194.5
Bpe14g00264 . 32 232 HSF AT3G51910 52.0 9.1e-49 190.7
Bpe05g00521 . 21 218 HSF AT3G51910 51.7 2.5e-46 182.6
Bpe13g01250 CCT 4 210 HSF AT5G54070 51.9 8.2e-52 201.1
Bpe02g02194 CCT 4 210 HSF AT5G54070 51.0 1.3e-49 193.7
Bpe07g00947 . 14 139 HSF AT4G36990 57.1 5.2e-39 158.3
Bpe05g00633 . 16 316 HSF AT4G11660 52.9 2.1e-80 296.2
Bpe02g00432 BCT,CCT 16 119 HSF AT4G11660 76.0 1.3e-45 180.6
Bpe05g00026 CCT 16 121 HSF AT4G11660 72.9 1.2e-43 174.1
Bpe04g00177 BCT,CCT 17 116 HSF AT4G11660 73.0 1.8e-42 170.2
Bpe02g00432 BCT,CCT 1 343 HSF AT1G46264 54.6 1.1e-91 333.6
Bpe04g00177 BCT,CCT 2 334 HSF AT1G46264 52.6 9.8e-88 320.5
Bpe05g00026 CCT 1 340 HSF AT1G46264 52.7 1.1e-86 317.0
Bpe07g00947 . 17 115 HSF AT1G46264 72.7 8.1e-42 167.9
Bpe14g00850 . 5 106 HSF AT1G46264 67.6 2.4e-38 156.4
Bpe05g00882 . 33 131 HSF AT1G46264 69.7 2.1e-37 153.3
Bpe13g01307 . 9 182 HSF AT3G24520 64.4 6.9e-59 224.6
Bpe08g00470 . 7 167 HSF AT3G24520 60.2 3.4e-50 195.7
Bpe06g00451 . 38 238 HSF AT4G17750 53.7 1.7e-56 217.2
Bpe14g00264 . 39 225 HSF AT4G17750 54.7 1.3e-53 207.6
Bpe14g00850 . 13 211 HSF AT4G17750 52.3 8.5e-53 204.9
Bpe02g00432 BCT,CCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bpe05g00026 CCT 14 117 HSF AT4G17750 67.6 2.2e-37 153.7
Bpe04g00177 BCT,CCT 21 118 HSF AT4G17750 68.4 5.0e-37 152.5
Bpe05g00633 . 20 115 HSF AT4G17750 70.8 6.5e-37 152.1
Bpe07g00232 . 22 325 HSF AT5G16820 64.1 2.0e-91 333.2
Bpe05g00521 . 19 320 HSF AT5G16820 63.9 5.9e-91 331.6
Bpe06g00451 . 39 244 HSF AT5G16820 54.0 9.4e-57 218.0
Bpe14g00850 . 15 210 HSF AT5G16820 53.1 1.3e-53 207.6
Bpe14g00264 . 40 225 HSF AT5G16820 52.9 2.0e-51 200.3
Bpe05g00882 . 37 235 HSF AT5G16820 51.9 3.6e-48 189.5
Bpe07g00232 . 24 508 HSF AT1G32330 52.3 4.6e-112 401.7
Bpe05g00521 . 21 504 HSF AT1G32330 50.5 2.6e-107 386.0
Bpe14g00850 . 10 190 HSF AT1G32330 51.8 3.6e-48 189.5
Bpe02g00432 BCT,CCT 18 117 HSF AT1G32330 70.0 7.5e-38 155.2
Bpe04g00177 BCT,CCT 19 118 HSF AT1G32330 67.0 8.3e-37 151.8
Bpe05g00026 CCT 20 116 HSF AT1G32330 70.4 2.4e-36 150.2
Bpe06g00451 . 39 243 HSF AT3G02990 53.8 2.2e-58 223.4
Bpe14g00850 . 15 213 HSF AT3G02990 52.6 9.5e-54 208.0
Bpe14g00264 . 40 226 HSF AT3G02990 51.8 3.1e-52 203.0
Bpe02g00432 BCT,CCT 8 133 HSF AT3G02990 58.9 5.6e-38 155.6
Bpe02g01074 . 7 395 HSF AT4G18880 50.4 1.5e-95 346.7
Bpe14g00850 . 7 483 HSF AT4G13980 52.6 8.7e-124 440.7
Bpe14g00264 . 32 232 HSF AT3G22830 54.3 2.0e-60 229.9
Bpe05g00521 . 10 232 HSF AT3G22830 55.7 5.0e-59 225.3
Bpe07g00232 . 28 236 HSF AT3G22830 55.1 1.6e-57 220.3
Bpe06g00451 . 26 314 HSF AT3G51910 52.2 1.1e-67 253.4
Bpe13g01250 CCT 1 208 HSF AT3G51910 51.2 6.3e-50 194.5
Bpe14g00264 . 32 232 HSF AT3G51910 52.0 9.1e-49 190.7
Bpe05g00521 . 21 218 HSF AT3G51910 51.7 2.5e-46 182.6
Bpe13g01250 CCT 4 210 HSF AT5G54070 51.9 8.2e-52 201.1
Bpe02g02194 CCT 4 210 HSF AT5G54070 51.0 1.3e-49 193.7
Bpe07g00947 . 14 139 HSF AT4G36990 57.1 5.2e-39 158.3
Bpe05g00633 . 16 316 HSF AT4G11660 52.9 2.1e-80 296.2
Bpe02g00432 BCT,CCT 16 119 HSF AT4G11660 76.0 1.3e-45 180.6
Bpe05g00026 CCT 16 121 HSF AT4G11660 72.9 1.2e-43 174.1
Bpe04g00177 BCT,CCT 17 116 HSF AT4G11660 73.0 1.8e-42 170.2
Bpe02g00432 BCT,CCT 1 343 HSF AT1G46264 54.6 1.1e-91 333.6
Bpe04g00177 BCT,CCT 2 334 HSF AT1G46264 52.6 9.8e-88 320.5
Bpe05g00026 CCT 1 340 HSF AT1G46264 52.7 1.1e-86 317.0
Bpe07g00947 . 17 115 HSF AT1G46264 72.7 8.1e-42 167.9
Bpe14g00850 . 5 106 HSF AT1G46264 67.6 2.4e-38 156.4
Bpe05g00882 . 33 131 HSF AT1G46264 69.7 2.1e-37 153.3
Bpe13g01307 . 9 182 HSF AT3G24520 64.4 6.9e-59 224.6
Bpe08g00470 . 7 167 HSF AT3G24520 60.2 3.4e-50 195.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011933 1 1 0 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21485 PF00447 HSF_DNA-bind 2.30E-31 CL0123 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00882 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00882 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Bpe05g00882 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0