Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00903 ATGGATGATATCGTGAGATCTGGTGGATCTTCAGAGGTGGTGGTGAAGAAGAGGAACTCTTCGGGTTGTTTAATTGTTAAAAAAAAAGTGGATGAGACGGGAAGCATCGGCTTCTCGAGTTCTGGAGTGGTTTTGAATTCCAAGAAGGAGAAGGAGAGACGAAGGTTGCCTGTTAGTGATTCAGAGTCCAGTGAAGAGCTTGCAATGGCTCCTCGGAGACGGTTTGGTCCAGAAACCGTTCGTTTCTGTAATGGTTTAAATGCTTTTGAAAATGGCAGCGAGGAAGATGAAATTGGGAGAGTGCAGAATACTTCGGAGTACAGCAGGCATCACAATGATGGTATGATGAGAAGGACTATCAAGGGGAGGACTCAAATAAATGGAAGCAAGTTAGATGTGTTTGATTTCAATGAGTATGATGAGAAGAAGATGCAGATGAGTCAATACAAGAACGTGGTGGCCGATTTTGGGAAAAGAAAGCTTTCAAGATCACTGCACTTATCTCGAAATGGCAATGAGAGGGTATTTAATGCTGGATCTATTACAAATATGACTGATAAGAGAACAGACAATTATATTGATCGTTCTGGTGGCTTTATTAGAGATAATCTTGCTAGTAGGAGTAACCATAAAGATGGGAGTCAGGTTCCTATATCATTTTCGAGAGACAAATTCACGGCTCAGTTGGATGAGCCAATCAGAGTTCAGGGGAAAAATGGCGTGTTGAAGGTTATGGCAAATAAGAAGAGAAATAATGGTGTTCTTGAGATAAATGATCACAGGAAATGCGAGGAAGATGAAAATATTTTGAATGAAGATGGTCCAAAAAGAAATGTTTCAAGGACTCCTTTTCATTCTGAAATCAAATGCTTCAAAAGACGGGGTTCATTGGCTAGCTCCGAGAGGAATCAAATGAATATGCAAGCATCATTTTCGACAAAAAATGGCCGAAGTGATTACGATTCTGATGGGAGTGACATTCCATTGAATCCTGAATCAGAGTCTGCAGAAGCTCATAAAATGACGAAAAGGACGATATGCGAAGATGAGAAAAGTCCAAGTGAAAAGCTTCCTCGAAATGCAGTGAAAGAAGGAAAAGCTAAACGTGGTAGTGGCACTGAAAAGCAAAAACTTCGAGAACAGATTAGGGGAATGCTCACCAATGCTGGATGGACCATTGATTACAGGCCTCGAAGGAACAGAGACTACCTAGATGCCGTGTATATTAATCCTAGTGGAACAGCTTATTGGTCAATCATTAAAGCATATGATGCGCTTCAAAAGCAAACAAATGGGGAGGATAATGAAGTTAGACAGAGTGGTGAGTGTTCTTTGTTCATGCCAATAGCAGATGCAGTACTTAGCCAATTGACGAGAAACACTCGGAAGAAGATTGAGAAAGAATTTAAGAAGAAGCAAAGAGATTTCAAGAATAGTGGAAAGGCCAAAGAAAGGGGCGGAAAAAAATCTGCCAATAGTAAGTATGATGTAGAAAGCATGAACAGTGATAGCAATGAAGAGAAACTTAGCACATTCATTAAGCATGGGAGTAAATCAATGAAGAATAGAGTTGGTGAAAATGATTTTTCTTCAGTAAATTTGAAAGGTATGAATTCTAGTAATAGCTTTCGTGATAGTGTTGAAAAACCATCATGTGGATCTAACTCCCACATTCATCAAGGAAGAAAAAGAAGAAAACTCGGGTTGCTGGTTCGTGGTTCCAACAAGGGACCAAATTCAGGGGATGACAGCTTTATCCCTTATACTGGAAAAAGAACTATTCTTTCCTGGCTAATTGACTCTGAAACAGTTCATTTAAGCCAAAAAGTTCGATACACGAACCGTAGACAAACAAGAATAATGCTGGAGGGATGGATTACCAGAGACGGTATTCATTGTGGTTGCTGTAGTAAGATTCTTACTGTTTCTAAGTTTGAGCTACATGCTGGAAGTAAACTTCGCCAACCTTTTCAAAACATAGTTTTGGAGTCTGGGGTTTCTCTTTTGGAATGTCAGATAGATGCTTGGAATAGGCAAGAGGAGTCTAAACGCCTTAGTTTTTACTCAATTGAAATGGATGGTGATGATCCAAATGATGACACATGTGGAATTTGTGGAGATGGTGGGGATTTAATTTGTTGTGATGGTTGTCCATCAACTTTTCATCAGAGCTGTTTAGACATACAGATTCCCCCTGGTGATTGGCACTGTCCAAATTGTACTTGCAAATATTGTGGCCTCACAAGCTTCGATGATTATGAATCAGATGATATTTCTACTACTGAGCTAAGTACTTGCACTATGTGTGAGAAAAAATATCACATATCATGCATCCAGGATATGGATTTGGTTGTTCCGCTTAATGGCCTACAGACGTCATTTTGTGGGCAGAAATGCCAAGAGCTCTTTGGCCATTTGCAGAAGCATCTGGGCGTCAAGCATGATCTAGATGGAGGATTTTCATGGTCACTTATTTGTAGAACAAACGAAGACTGCGATTCATCAGTTCGTGGACTTCCTCACCGGGTGGAATGGAATTCTAAACTAGCTGTTGCCTTGACAATTATGAATGAATGCTTTTTACCTGTTGTTGACAGGAGGAGTGGAATCAACTTAATCCATAATGTTCTGTATAATAGTGGATCAAATTTTAATCGCCTCAATTATAGTGGCTTTTACACTGCTATTCTGGAGAGGGGTGATGAAATCATCTCCGTTGCATCTATCAGGTTCCACGGGACTAAGTTAGTGGAGATGCCGTATATTGGGACACGGCATATTTATAGACGTCAAGGGATGTGCCGTCGGCTTTTTTGCGCCATCGAAGCTGCTCTCTGCTCTTTCAAGGTCGAGAAACTAATCATTCCTGCAATTGCTGAACTCATGCATACATGGACTGAGGTGTTTGGTTTTACTCCTCTTGAAGAGTCACTCAAGGGAGAAATGAGGTCCTTGAACATGTTAGTCTTCCCTGGTACAGACATGTTACAGAAGGAGCTTATTGACAATGAAGCTGTGGACGACAATCCCGCTTCGACCTCAGGTTTAGATTTGTTTTTGAAAACAGTTTTCGGATGTGCATTTGGTGGGTCATCTCCCAATCAGGAAAATGTGTTTTTTTATAAAAGAGTTCCACAAACCATTATCTTCAAAGATTAG 3159 40.39 MDDIVRSGGSSEVVVKKRNSSGCLIVKKKVDETGSIGFSSSGVVLNSKKEKERRRLPVSDSESSEELAMAPRRRFGPETVRFCNGLNAFENGSEEDEIGRVQNTSEYSRHHNDGMMRRTIKGRTQINGSKLDVFDFNEYDEKKMQMSQYKNVVADFGKRKLSRSLHLSRNGNERVFNAGSITNMTDKRTDNYIDRSGGFIRDNLASRSNHKDGSQVPISFSRDKFTAQLDEPIRVQGKNGVLKVMANKKRNNGVLEINDHRKCEEDENILNEDGPKRNVSRTPFHSEIKCFKRRGSLASSERNQMNMQASFSTKNGRSDYDSDGSDIPLNPESESAEAHKMTKRTICEDEKSPSEKLPRNAVKEGKAKRGSGTEKQKLREQIRGMLTNAGWTIDYRPRRNRDYLDAVYINPSGTAYWSIIKAYDALQKQTNGEDNEVRQSGECSLFMPIADAVLSQLTRNTRKKIEKEFKKKQRDFKNSGKAKERGGKKSANSKYDVESMNSDSNEEKLSTFIKHGSKSMKNRVGENDFSSVNLKGMNSSNSFRDSVEKPSCGSNSHIHQGRKRRKLGLLVRGSNKGPNSGDDSFIPYTGKRTILSWLIDSETVHLSQKVRYTNRRQTRIMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLRQPFQNIVLESGVSLLECQIDAWNRQEESKRLSFYSIEMDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGLTSFDDYESDDISTTELSTCTMCEKKYHISCIQDMDLVVPLNGLQTSFCGQKCQELFGHLQKHLGVKHDLDGGFSWSLICRTNEDCDSSVRGLPHRVEWNSKLAVALTIMNECFLPVVDRRSGINLIHNVLYNSGSNFNRLNYSGFYTAILERGDEIISVASIRFHGTKLVEMPYIGTRHIYRRQGMCRRLFCAIEAALCSFKVEKLIIPAIAELMHTWTEVFGFTPLEESLKGEMRSLNMLVFPGTDMLQKELIDNEAVDDNPASTSGLDLFLKTVFGCAFGGSSPNQENVFFYKRVPQTIIFKD 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22054738 22059986 - Bpe018314.1 Bpe05g00903 104680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 523 564 - -
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 310 378 - -
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 523 557 - -
Bpe05g00903 1052 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 690 758 IPR013083 -
Bpe05g00903 1052 Pfam Tify domain binding domain 624 674 IPR032308 -
Bpe05g00903 1052 ProSitePatterns Zinc finger PHD-type signature. 702 740 IPR019786 -
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 336 378 - -
Bpe05g00903 1052 PANTHER PHD FINGER FAMILY PROTEIN 1 1010 - -
Bpe05g00903 1052 CDD PHD2_CHD_II 702 740 - -
Bpe05g00903 1052 SMART PHD_3 744 800 IPR001965 -
Bpe05g00903 1052 SMART PHD_3 701 741 IPR001965 -
Bpe05g00903 1052 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 881 977 IPR016181 -
Bpe05g00903 1052 SUPERFAMILY FYVE/PHD zinc finger 682 743 IPR011011 -
Bpe05g00903 1052 Pfam PHD-finger 702 743 IPR019787 -
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 468 502 - -
Bpe05g00903 1052 ProSiteProfiles Zinc finger PHD-type profile. 699 743 IPR019787 -
Bpe05g00903 1052 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1010 - -
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 47 69 - -
Bpe05g00903 1052 MobiDBLite consensus disorder prediction 468 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00903 - - - qlo:115995077 1204.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00832 Bpe05g00903 CCT
Bpe04g00832 Bpe05g00903 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00157 Bpe-Chr4:1020471 Bpe05g00903 Bpe-Chr5:22054738 2.27E-86 dispersed
Bpe04g01608 Bpe-Chr4:22254873 Bpe05g00903 Bpe-Chr5:22054738 2.16E-45 dispersed
Bpe05g00488 Bpe-Chr5:19116348 Bpe05g00903 Bpe-Chr5:22054738 2.72E-06 dispersed
Bpe05g00903 Bpe-Chr5:22054738 Bpe10g00402 Bpe-Chr10:11528814 0 dispersed
Bpe08g00191 Bpe-Chr8:1071773 Bpe05g00903 Bpe-Chr5:22054738 3.64E-09 transposed
Bpe08g01200 Bpe-Chr8:13681116 Bpe05g00903 Bpe-Chr5:22054738 9.85E-11 transposed
Bpe04g00832 Bpe-Chr4:5457092 Bpe05g00903 Bpe-Chr5:22054738 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21487 PF16135 TDBD 5.60E-21 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00903 Bpe_Chr05 FPKM 0.0 0.118181 17.3123 16.111439 30.915005 27.617788 32.37582 0.037233 0.0 0.0