Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00906 ATGGATAGAAACAGAGAAGCTAGGAGGTCTACGATGGCGGCGACGAATGGGTTAACAAGGCGAAGACACAGAACTACGAGTCTCAGAGAGTCTCCGGAGGAAGATGTAGCGGTGGAGTTGCAGGAGACGGCGAGGCTCAGAGATCGAGGAAGCGGGAAGAAAGATCGAGACCGTGAGAGGGATCGTCTTAGTCGGAGCAAGAGGAGAGCGGACAGATTAATGCATGGGAGTAATCGGGAAGATGTTGGGGAAGAGAGTTCAGAGGAGAGTGTAAATGACGAAGAAGACGATGAGGATGAAGATTGTGGCGGTTCGGTGAGGATGCTTCCTCCCAACCCTTCGTCGTTGCCGTCGATTTCTAATCACCGAAAAACCTTTCATCCGGCGAAGACTTTCCGAACCGCCGCAACGTGGAAAGCGGCTGACGAAATGATCGGTGTGTCAGTTCCCAGAAAAGCGCGCTCAGTTTCTACGAAGAGGTCCCACGACTCATGGACTCCGACCGCTGGGGTTGGAAGCGCGGAGCTAAGCCACCGACAGGCTTCAACATCTCCGGTGAGGCTGACCGTCGGTCTGGCGACGCCGTCTCTAGCTCCGACGTCACCTTCTTCATCTAATGCTTCGGCGAGGAAGAAGCCGAAGTCGAACGGACCGAAACTGCGGCCGCCGAAAGTGTCGTCGAAGTCTTCTTCGGCTCAGGACGAGATCGAGATCGAGATAGCCGAGGTATTGTACGGAATGATGAGACAGCCTCAAGGACCTTCTAAGCAAGACATCTCAGTCAGTGATTCGAGAGAAGTGAACAAATCGACGACGGACGCTAAATCTAGGGTTTCTTCTCCGATCTCGAATTCTTCCTCTGCTTTACCACTTCCGTCGTCGATTGTGACTCAAAATTCCGCTTCCATCATCTCTTCAATATCTGCGATTGCACCCAAGAGAAAAAGACCTCGACCCATCAAGTATGAGGACGAGAACCCCTCGAGTTTCAGTGGGAGGAATGGACCCATTTTGTCGACGACCAAACCCGAGACTGACCACTCACCGATAACAGAGATATCCTCTCGTAATCTCAAGAAAGCTTCTGGATTCTTAGCTGAAAATGGCAGAGTTTCAGTCAATTTCGGAAGCTCTCATGTTGCTGCTGCCTCGTTGGAGGAGCAGATCGAACAAATCAAGCCCGAAGTTAACGTTTTGTCAGATTCAAAACCTTTGGTTGCAGAATCAAATGGTAAAGATTTGGGTGTGACGAAGGAGGAGCCTCAATCGCCCAAAAATGGAACTCCAGTTCTCATTTTGAATAACAACAATCGGGACGAGATGACGTCGACCGAGCCTCATTCGTCCATGGCGGAATTCGAGAATCAGAGAGAAGAGAAGTTCCAAATAGATCTGATGGCTCCTCCTCCATCGCGATCATCTCCAGAAAGAAATGGCTTGATTGATTTTGTGGCTGTAGATCCGAAATCTATGGTCACTGATGCAGAAATGGAAATAAATAAGGCTAAGATGAAGGAAGACGATAAAGCGTCGAAAATAGGAAAAGAAGATGAAGTTAACGCGGAGGCCAAAGCTAAATCTGAGGATGCAGATTCTAGAAATCATCTTGTTATGATTAGTAAAGACAGGGTTCCTTCAGATTTGGACAAAACTGAAACAGAGTCTGGCTATGGAGGTTTGAGCAATAATAAGCTAAACAGGCTTGCCCAGAAGCAGCTCCAACCTTCTTCAATCTCAGACAAATCTGGCCAAGCTAATTCTCTTCCTCTCCCCATGTCTATGGCCGGCTGGCCGAGTGGGCTTCCTCCCATGGGGTATGTGACTCCTCTGCAAGGAGTTGTATCCATGGATGGAAGCTCTGTTACATCTACAGCAGCTATTCAACCGCCGAATTTACTTTTTCCTCCAGCCCGGCCAAAGAGATGTGCAACCCATTGCTACATTGCTAGAAACATTTGTTATCATCAGCAAATTGCTCGAATGAATCAGTTCTGGCCGGCTGCTCCCGGCTCAGCTTCTATGTTTGGGGCCAAGCACTGTAATTTGAATGTCTTACCCTCTTCGGATTTTCATGGAAATCTTCCGGGTAAGAGCACGAACTCATTGCAGGACAAAGCTCAGAGTTTACCCACTTTCTCTGCTCAGTCTGGAAAGGACAACAAGTCTCCTCAACCAACCACCATTGTTGACGTTTCTCAGAGAAAGCAAATTCTAGTCCAGCAATCTTTACCTCCTGGAGCTCCTAGTAATATTCTGGGTCCGGCTTTTATCTTCCCGTTGAACCAACAACAGGCTGCAGCTGCGTCCGGCCGACTTGGCTCAGTGAAATCACTGTCTGGTGGAGCTATCTCCTCTGCTACTTCGAGTTCAGCTTCCATGAGTGGGTCTGCTGGAGCTGCCATTGCAGGACCTACTATGAGCTTCAATTATCCCAATATGCCAGTCAATGAGGCACAGTACTTAGCCTTCTTGCAGAACAATGGCTATTCTTTTCCAATCCCGTCTCATGTTGGTGCCCCTCCTGGATATAGAGGACCTCATCCTCCTCCGGCAATGCCTTTTTTTAATGGCTCATTCTATTCTTCCCAAATGATTCATCCTCAACCTTCCGGTCAGACACAGCTGAGTCAACAAGGTCCTCAGAGCACTGCAGTTGCTGGCAGTGGTTCTTCGAATCAGAAGCATTTACAGAGCCAGCAACCGAGATCCCATTCCGGAGGAGTTTATGGTGGTGGTGGAAATTTGCAAGGCTTTCCTGCCTCCAAAAACCAGGCCTCTCAACCACTGCAGCCGCCTCGGCCTCAACAGCTCGAGTCCGAGATTGGTGGAGAAGAAAGCCCATCAGCAGCCGATCGGGTTTCTCGATCGAATATGAATGTTTATAGTCAGAATTTCCCCATGCCAATTCACCCGCCTCCGAACTTTACTGTGATTAATCCTCCTGTCCCCATTTCCAGCAGTGGTAAAAAGAAGCATTCTCTACCACAGGGCGGCTCCAAAACAGGAGTCGAGCCAGCTCAAGCTTTTGCCTTATCTTTTGCCTCCATTAATGGTGCTTCCACCACAACTGGAATTGATCTCTCGACGATTGCACCAAATCATCCTATGTCTCATAACCTTCCAGAACTTACCAGACAGTCGTATCAGTTTATGGCAGCTGCGGCCCAGGCGGCACAGCCAAAGAAAAGCTACCCAGACGGAAATGGGGATAATTCTTCAAGCGTGGAGGAAGATAGAAAAACAATGGCGGCAAAAACTCCAACTCCGACTCCGACTCCGACTATGGTTCAGTCCATTGCTTTCTCCAGAACAGATTTATTGGATGCATCATCTGTTTCCACCATTCCGGTTGGGACTACAATGGTTGATAGCCTGGCTCGAAGGCCTACTGGTAATGGCAATGGCGGTGTTTATTACGATCACATTCCGTCTTCTTTTCCTCAAAATCTAGTCCAAAGTAACACCACCACCAGTCCAGCTCAATCTCCCCAGTGGAAGAATTCAGCGAGAGCAACTTCTCAGGTTCCTACTCAATCTGTTTCTTCAACCTCGTCTTCTTCGAAAAATCTTCCTCAGCAGCCGAACCGACCCCAGCAAAGCCAGACGCAGATTTCTTTTGCAGCCAATCCTAAATCTTCTTTGCAAAATCAAGCACAACAAGCTGTTAGTAGCAGTCAAGCTCCATCTCCTCCATTAATGGTCGGCTCTCCAACCTCTTCCATCTCAAAAAGTTCTGGTGGAAGCCCAAGACTAGCTACTTCTACCACCACAGGAACCAAAACTGGCCAAGCTCCAATGTCAACATCTCAGCAAATCAAGAATTCCCAGCCATTGCCGACCCAGAAGTCAATTCTTGGGAATCCTCATGGCACCTCTTCATCGAGCTCAGGAGGCAAAACCCAGAAGCAGCCTCAGCAGCAGCATTTATCGAAGCCGTCACTGCAACAAGCTCAGCTCTTCTTCTCTCACCCCTACATGCAGGCTCAAGCTTCTCATTCCACAAGCCCTTCAGCTGCCTCAGCTGCCGGGGGGTATTATCTCCAAAGGCGGCGGCCAGAGTCTCAACCGGCTGCTCCACCGGGCCAATCAGCGACAACTTCTGGTGGCATGTTATCGTTATGCTCTCCTATCACTCTCGATCCAGCAAAAATTGTTGCTGGGGGATCAGCCGGGAACAACCCAAAAACCGGAGGTGGCTTACCCGCACCGACAGTCCACCCGGCTCAGTTTTCCACTACACATTCATCAGGAAATTCACATCATTCTCTGCCGGCAGGTTTCCCATACATTCATGCGGTTTCCCCTGCAGCAGTTCAGGCGAAGCCAACTGAAAAACAACCTGCAGGTGAGTAG 4353 49.21 MDRNREARRSTMAATNGLTRRRHRTTSLRESPEEDVAVELQETARLRDRGSGKKDRDRERDRLSRSKRRADRLMHGSNREDVGEESSEESVNDEEDDEDEDCGGSVRMLPPNPSSLPSISNHRKTFHPAKTFRTAATWKAADEMIGVSVPRKARSVSTKRSHDSWTPTAGVGSAELSHRQASTSPVRLTVGLATPSLAPTSPSSSNASARKKPKSNGPKLRPPKVSSKSSSAQDEIEIEIAEVLYGMMRQPQGPSKQDISVSDSREVNKSTTDAKSRVSSPISNSSSALPLPSSIVTQNSASIISSISAIAPKRKRPRPIKYEDENPSSFSGRNGPILSTTKPETDHSPITEISSRNLKKASGFLAENGRVSVNFGSSHVAAASLEEQIEQIKPEVNVLSDSKPLVAESNGKDLGVTKEEPQSPKNGTPVLILNNNNRDEMTSTEPHSSMAEFENQREEKFQIDLMAPPPSRSSPERNGLIDFVAVDPKSMVTDAEMEINKAKMKEDDKASKIGKEDEVNAEAKAKSEDADSRNHLVMISKDRVPSDLDKTETESGYGGLSNNKLNRLAQKQLQPSSISDKSGQANSLPLPMSMAGWPSGLPPMGYVTPLQGVVSMDGSSVTSTAAIQPPNLLFPPARPKRCATHCYIARNICYHQQIARMNQFWPAAPGSASMFGAKHCNLNVLPSSDFHGNLPGKSTNSLQDKAQSLPTFSAQSGKDNKSPQPTTIVDVSQRKQILVQQSLPPGAPSNILGPAFIFPLNQQQAAAASGRLGSVKSLSGGAISSATSSSASMSGSAGAAIAGPTMSFNYPNMPVNEAQYLAFLQNNGYSFPIPSHVGAPPGYRGPHPPPAMPFFNGSFYSSQMIHPQPSGQTQLSQQGPQSTAVAGSGSSNQKHLQSQQPRSHSGGVYGGGGNLQGFPASKNQASQPLQPPRPQQLESEIGGEESPSAADRVSRSNMNVYSQNFPMPIHPPPNFTVINPPVPISSSGKKKHSLPQGGSKTGVEPAQAFALSFASINGASTTTGIDLSTIAPNHPMSHNLPELTRQSYQFMAAAAQAAQPKKSYPDGNGDNSSSVEEDRKTMAAKTPTPTPTPTMVQSIAFSRTDLLDASSVSTIPVGTTMVDSLARRPTGNGNGGVYYDHIPSSFPQNLVQSNTTTSPAQSPQWKNSARATSQVPTQSVSSTSSSSKNLPQQPNRPQQSQTQISFAANPKSSLQNQAQQAVSSSQAPSPPLMVGSPTSSISKSSGGSPRLATSTTTGTKTGQAPMSTSQQIKNSQPLPTQKSILGNPHGTSSSSSGGKTQKQPQQQHLSKPSLQQAQLFFSHPYMQAQASHSTSPSAASAAGGYYLQRRRPESQPAAPPGQSATTSGGMLSLCSPITLDPAKIVAGGSAGNNPKTGGGLPAPTVHPAQFSTTHSSGNSHHSLPAGFPYIHAVSPAAVQAKPTEKQPAGE 1450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22083375 22088803 - Bpe018317.1 Bpe05g00906 104683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 1148 1313 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 421 450 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 86 102 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 111 125 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 856 905 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 982 1002 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 917 934 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 313 350 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 504 562 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 160 212 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 247 292 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 253 292 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 1 125 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 841 953 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 1054 1095 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 23 85 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 1350 1370 - -
Bpe05g00906 1450 PANTHER PROTEIN TIME FOR COFFEE 1134 1448 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 149 233 - -
Bpe05g00906 1450 PANTHER PROTEIN TIME FOR COFFEE 1 1127 - -
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 406 456 - -
Bpe05g00906 1450 PANTHER PROTEIN TIME FOR COFFEE 1 1127 IPR039317 GO:0042752
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 504 550 - -
Bpe05g00906 1450 PANTHER PROTEIN TIME FOR COFFEE 1134 1448 IPR039317 GO:0042752
Bpe05g00906 1450 MobiDBLite consensus disorder prediction 327 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00906 - - - jre:109010448 1111.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00837 Bpe05g00906 CCT
Bpe04g00837 Bpe05g00906 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00906 Bpe-Chr5:22083375 Bpe06g00470 Bpe-Chr6:16011353 5.15E-26 dispersed
Bpe04g00837 Bpe-Chr4:5499025 Bpe05g00906 Bpe-Chr5:22083375 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00906 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0