Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00910 ATGAGCAGAAGCAGCAACAATGGCGGTGGTGGGCCGTGTGGAGCCTGCAAGTTTCTGAGAAGAAAATGCGTGAAAGGCTGCGTATTTGCTCCGTATTTCGATTCAGAACAAGGCACTGCACATTTTGCAGCAGTTCATAAGGTGTTTGGAGCAAGCAACGCTTCAAAACTTCTGATTCACGTTCCTGTTCATCGACGTCTGGATGCAGTCGTCACTCTCTGTTATGAGGCTTTGGCTAGGGTTAGAGATCCTGTCTATGGCTGCGTTGCCCATATTTTTTCTCTACAACAGCAGGTGATGAATTTGCAAATGGAGTTAGCTCTTGTTGAAGCTCGGCTTTACATGATACAAAGACTTTCACCTAATCTTGCACTTGCACCAACAATCCCTCGCTCTTTGTTCCAAGACACCATGTTATCGCCTTCAAACAAGCTCGTGCCTCTCGACCCGTTTCAAACTACGTCGTTTTTCTTTCCCGACCAAGGAGTAATATCCTCAGTTGATCTCAACAAAATTTTAGACTAG 525 45.52 MSRSSNNGGGGPCGACKFLRRKCVKGCVFAPYFDSEQGTAHFAAVHKVFGASNASKLLIHVPVHRRLDAVVTLCYEALARVRDPVYGCVAHIFSLQQQVMNLQMELALVEARLYMIQRLSPNLALAPTIPRSLFQDTMLSPSNKLVPLDPFQTTSFFFPDQGVISSVDLNKILD 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22116210 22117523 - Bpe018321.1 Bpe05g00910 104687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00910 174 Pfam Lateral organ boundaries (LOB) domain 12 110 IPR004883 -
Bpe05g00910 174 Coils Coil 92 112 - -
Bpe05g00910 174 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Bpe05g00910 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 5 131 - -
Bpe05g00910 174 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00910 Bpe-Chr5:22116210 Bpe06g00431 Bpe-Chr6:15701204 8.59E-52 dispersed
Bpe05g00910 Bpe-Chr5:22116210 Bpe05g00911 Bpe-Chr5:22121456 8.08E-62 tandem
Bpe04g00843 Bpe-Chr4:5563744 Bpe05g00910 Bpe-Chr5:22116210 2.37E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21488 PF03195 LOB 7.50E-37 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00910 - K21994 zju:107405081 225.328