Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00919 ATGGGTCGAGGAAGAGTGGAGCTTAAGAGAATAGAGAACAAAATCAATCGACAGGTTACTTTCTCGAAGAGGAGAAATGGGTTGCTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGCGATGCTGAGGTTGCTTTGATCATCTTCTCCAGTCGTGGCAAGCTTTATGAGTTTGGAAGTTCTGGGTATCTCTCCCTTTCTTTGTGTTCTTTAATTATACGTCACCGAGCCTGTTTTACGCACATTTTTCGTGAAAATGTTGATATTAATCTCTATAATTATATGATTGTTTATATTAAAAGGCATTTGCTTGGGGAAGATCTTGGACCTCTAAACGTGAAGGAGCTTCAAAATCTTGAAAAACAGCTTGAAGGAACACTTGCACAAGCCAGGCAAAGAAAGACTCAAATTATGATTGACCAGATGGAAGAGCTTCGCAAGAAGGAACGTCAGCTTGGAGATATTAACAACCAACTCAAGATCAAGCTTCAAGCAGAAGGGCAAGTACAGAATTTCAAAGCCTTCCAAAGCTTGTGGAGTTCATCAAGTGGAGGAGGAAATGGCCATGGAAACTTTGGTTTGGATCTTTTTCAAACCAACCCTTTGGACTGCCATAGCCACCCTGGACCTGTTCTACAAATTGGATATGATGATTATGTTCAAGGAGAGGGATCATCCATTCCGAGGAGCGTGGCTTGTGAGACCAACTTAGTTCAAGGCTGGCTACTGTGA 729 41.84 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSSGYLSLSLCSLIIRHRACFTHIFRENVDINLYNYMIVYIKRHLLGEDLGPLNVKELQNLEKQLEGTLAQARQRKTQIMIDQMEELRKKERQLGDINNQLKIKLQAEGQVQNFKAFQSLWSSSSGGGNGHGNFGLDLFQTNPLDCHSHPGPVLQIGYDDYVQGEGSSIPRSVACETNLVQGWLL 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22171779 22176102 + Bpe018330.1 Bpe05g00919 104696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00919 242 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Bpe05g00919 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 226 - -
Bpe05g00919 242 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Bpe05g00919 242 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Bpe05g00919 242 PANTHER MADS BOX PROTEIN 1 226 - -
Bpe05g00919 242 Coils Coil 137 161 - -
Bpe05g00919 242 Pfam K-box region 99 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe05g00919 242 Coils Coil 112 135 - -
Bpe05g00919 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe05g00919 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe05g00919 242 ProSiteProfiles K-box domain profile. 78 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe05g00919 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe05g00919 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe05g00919 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe05g00919 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe05g00919 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00881 Bpe05g00919 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00919 Bpe-Chr5:22171779 Bpe14g00138 Bpe-Chr14:1858128 4.32E-59 dispersed
Bpe05g00919 Bpe-Chr5:22171779 Bpe03g00324 Bpe-Chr3:4797532 1.13E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21490 PF01486 K-box 1.40E-21 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00919 K09264 - cpap:110823775 285.419