Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00920 ATGGTGAGAGGAAAAACTCAGTTGAGACTGATAGAAAACGCCACGAGCAGGCAAGTGACCTTCTCAAAGAGGAGAAGTGGGCTTCTGAAGAAGGCTTTTGAGCTTTCTGTTCTCTGCGATGCTGAAGTAGCCCTCATCGTCTTCTCCCCCAGAGGAAAGCTCTACGAATTTTCAAGCTCTAGCATGCATGCGACAATAGAGCGTTATCGAAGGCAAATCAAAAGCAGCCGTATCATCGAGAAAATCCCGAATGGAAATCTTAAGTGCAGGAATCAGGAAGTATCAGCAATGGCGAAGAAAGTTGAGCAGCTTGAAGTTTTGAAAAGGAAACTTTTGGGACAAGATCTTGAATCTTCCACCATTGAAGAGCTTGTACATGTTGAAACTCAACTCGAGAAAAGCATTACAAGCATCCGAGCAAGAAAGAATCAAGTTTTCAATGAACAAATTAAGCAGTTGAAACAGAAGGGAAAAATCTTAGAAGCTGAAAATGCAAGGCTAAGTGCCAAGTTTGGAAGTTTTGGAGGAAAGCAAACCAAGGAGGGTGAAGAAGAAAAGAGAGGAAATGGGCAGAGTGAAGTGGAAACAGAACTCTTCATTGGCCTACGCCCAGATACAAGGACAGAAGCGTCATTTCACTTACGAAACTAA 651 42.86 MVRGKTQLRLIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSSSMHATIERYRRQIKSSRIIEKIPNGNLKCRNQEVSAMAKKVEQLEVLKRKLLGQDLESSTIEELVHVETQLEKSITSIRARKNQVFNEQIKQLKQKGKILEAENARLSAKFGSFGGKQTKEGEEEKRGNGQSEVETELFIGLRPDTRTEASFHLRN 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22177393 22181642 - Bpe018331.2 Bpe05g00920 104697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00920 216 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bpe05g00920 216 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe05g00920 216 PANTHER MADS BOX PROTEIN 1 204 - -
Bpe05g00920 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 PANTHER MADS-BOX PROTEIN SOC1 1 204 - -
Bpe05g00920 216 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Bpe05g00920 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 MobiDBLite consensus disorder prediction 177 192 - -
Bpe05g00920 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 Coils Coil 143 170 - -
Bpe05g00920 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe05g00920 216 Pfam K-box region 90 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe05g00920 216 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Bpe05g00920 216 MobiDBLite consensus disorder prediction 171 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe05g00920 Bpe14g00906 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00920 Bpe-Chr5:22177393 Bpe14g00906 Bpe-Chr14:6756127 1.71E-59 dispersed
Bpe07g00957 Bpe-Chr7:15358969 Bpe05g00920 Bpe-Chr5:22177393 7.81E-29 dispersed
Bpe15g00277 Bpe-Chr15:14236773 Bpe05g00920 Bpe-Chr5:22177393 2.38E-16 dispersed
Bpe05g00920 Bpe-Chr5:22177393 Bpe08g01465 Bpe-Chr8:15372298 3.94E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21491 PF01486 K-box 5.40E-23 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00920 - - mnt:21403655 238.424