Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00945 ATGCTATGCTGCTGGGTTATACACTTCATTTCCAGGAACTGGTTTAATGGTGGAGAAATGGAAACAAAAAATGATTTTCTGGGTGAGAGCCTCAAGGTCTGGCTCAAATTTTGGGAGATCACTGGTAAGAGTTGTAAGATCCATCTTCAATACTACCAATTTATAGGATTCAAAAGAGCCAGAAAAACATGGTGGAGAAAAATTTTAGTTGCTTGGGTGCTCGGTTGGACCTTAGTATCATTGTGGATCTTCTGGTACATGAACTTACAAGCGACTGAGAAGAGAAAGGAAACTCTTGGCAGTATGTGTGATGAGAGGGCAAGAATGTTGCAAGACCAATTCAATGTGAGCATGAACCATATTCAGGCAATGTCCATTTTGATCTCCACATTTCATCACGGCAAAAATCCTTCGGCTATCGACCAAGCAACTTTTGCTAGATACACAGAAAGAACTGCTTTTGAGAGGCCTCTTACAAGTGGTGTGGCATATGCTGTGAGGGTGCTCCACTCTGAAAGAGAACAATTTGAGAAGCAACATGGATGGACTATTAAAAGAATGGATACACTGGAGCAAGCCCCAGTTCACAAAGATGATTACGCCCCGGAAGGCTTGGAGCCGTCTCCAATTCAGGAAGAATATGCTCCTGTCATCTTCGCCCAAGATACCATTTCTCATGTGGTTTCACTTGATGTGCTCTCTGGAAAGCCCACTACTCAAAGAGAAAATTCAGTTTTTAAATCGATAGCATTTCAAATATTTGCATATGAACAGGAAGACCGGGAAAATGTTTTGCGGGCAAGAGCATCCGGAACAGGGGTCCTAACTGCGCCTTTGAGGCTATTAAAAACAAATCGACTTGGAGTAATATTAACTTTTGCTGTTTACAAGGTGGATCCCCCTTCAAATGCCACCCCAAAGGAGAGAATTCAGATGACTGATGGATATCTTGGCGGAGTCTTCGATATCGAGTCTCTTGTGGAGAAATTACTTCATCAACTTGCTAGCAAGCAAACCATCCTTGTGAATGTTTATGACACAACTAATCACTCACATCCTATCAGCATGTATGGTTCATATGAATCAGAGAATGGCTTGCAGCATGTCAGTCCTCTCAACTTTGGAGATCCATTTCGGAAGCATGAGATGCGATGCAGGAAAAACGAACAAAAACCACCATGGCCATGGCTGGCTATTACAACTTCTATTGGTACACTTATTATTGCATTGCTGGTCGGGCATATATTTAATGCAACCTTGAATCGAATTGCCAAAGTAGAAGATGATTACCATAAGATGACGGAACTGAAGAAACGGGCGGAGGATGCTGATATCGCAAAATCACAGTTCCTTGCTACTGTTTCCCATGAGATCCGAACCCCTATGAACGGTGTTCTAGGTGAGAGTTGTAAAATGCTCTGTGTTCGTCTGTATATGACATTGTTTGATTATCCAGGAATGTTGGACATGCTTATGGACACTGATCTAGATGTGACCCAACTAGATTTTGTTAGAACTGCACAGGCAAGTGGGAAAGCTTTAGTCTCACTAATAAATGAGGTTTTGGATCAAGCAAAGATTGAATCCGGCAAGCTTGAACTTGAAGCAGTGCAGTTTGATCTGAGGGCTATTTTGGATGATGTTTTATCGCTCTTTTCTGGAAAATCACAGGAAAAAGGAGTAGAGTTGGCAGTTTATATTTCAGATCGTGTTCCTGAGATGCTAATTGGTGATCCTGGAAGGTTTCGCCAAATCATTACTAATCTCATGGGGAACGCAATCAAGGCGAGTAATTTTTTCACAGAGAAAGGACACATCTTTGTGACAGTTCATTTAGTGGAGGAGGTGAATGATTCAATTGATGTTGAGATAGAGTTTTCGTCGAAGAACACATTGAGTGGTTACCCTGTTGCCAATAGACGTCGAAGTTGGACGGGATTTAGGGGCTTCAACCAAGAGGGCCAATCCTGTCCTATCATATCATCCTCATCTGACCTAGTTAACCTAATCGTATCAGTTGAAGATACTGGAGTTGGGATCCCGTTAGATTCTCAGCCTCGTGTTTTCACTCCATTTATGCAAGTCCGGCCGTCAATCTCCAGAACTCATGGAGGAACCGGCATTGGGCTGAGTATAAGCAAATGCTTGGTTGGGCTGATGAAGGGAGAAATTGGATTTTCAAGCATCCCCAAGATTGGTTCCACCTTTTCTTTTACTGCTCTCTTCACAAATGCTTGTGCTTCAGATGAATACAAGTTCCAACAAATTAATAAGAAACCCAATTCTTCCTTTGCCGATTTTAAGGGCATGACAGCTTTACTCGTAGATCATCGATCTGTCAGGGCGAAAGTGTCAAGATATCATATTCAACGACTCGGGATTCAAGTCAACATAGTTTCTGATCTGAATCATGGACTATCAAGTACGAGTAATTTTAGTACAAATGTCGATGCCGTATTCATTGAGCAAGAAATTTGGGATTTGGATCCAGCCATTTCAGCTCTTTTTGCCATTAGCTTGAAAAAATCCGATAATATGGCTTCTCCAAAAGTGTTTATTTTATCTGACTCTTTTAGCAATTTAAGAACAAGCTCAAGTTCTTTTAGTGTTTTGAGTCCTGCAGTCATCACAAAGCCTCTTCGATCAAGTATGCTTGCGGCCTCACTACAACGAGCCATGGGTGTAGGGAACAAGGGTAATGCCTGTAATGGGGAAATTCCTAGTTTCTCCCTGCACAATCTTCTTCTTGGAAGGAAAATTTTAGTTGTAGATGATAATAATGTCAATCTCAAAGTGGCTGCTGGAGCTCTGAAAAAGTATGGAGCTGATGTTGTTTGTGAGATCAGGGGGAATAATGCAATCTCACTGCTTACACCGCCCCACCATTTTGATGCATGCTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGTTACAAAACAGGTTCGGGAAATCGAACATCGTACCAACAACCGGCTTCAAAGTGGAGAGCTGTCGGTGGAATTATACAAAAACATTTCAAATTGGCATTTACCCATTTTGGCCATGACTGCAGATGTTATCCAGGCTACACATGAGGAATGTCTACGATGCGGAATGGACGGATATGTCTCCAAACCTTTTGAAGCCGAACAACTTTATCGAGAAGTTTCACGATTTTTCCACTCTTCAAGTGGAACTTTGTAG 3192 41.79 MLCCWVIHFISRNWFNGGEMETKNDFLGESLKVWLKFWEITGKSCKIHLQYYQFIGFKRARKTWWRKILVAWVLGWTLVSLWIFWYMNLQATEKRKETLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQATFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQHGWTIKRMDTLEQAPVHKDDYAPEGLEPSPIQEEYAPVIFAQDTISHVVSLDVLSGKPTTQRENSVFKSIAFQIFAYEQEDRENVLRARASGTGVLTAPLRLLKTNRLGVILTFAVYKVDPPSNATPKERIQMTDGYLGGVFDIESLVEKLLHQLASKQTILVNVYDTTNHSHPISMYGSYESENGLQHVSPLNFGDPFRKHEMRCRKNEQKPPWPWLAITTSIGTLIIALLVGHIFNATLNRIAKVEDDYHKMTELKKRAEDADIAKSQFLATVSHEIRTPMNGVLGESCKMLCVRLYMTLFDYPGMLDMLMDTDLDVTQLDFVRTAQASGKALVSLINEVLDQAKIESGKLELEAVQFDLRAILDDVLSLFSGKSQEKGVELAVYISDRVPEMLIGDPGRFRQIITNLMGNAIKASNFFTEKGHIFVTVHLVEEVNDSIDVEIEFSSKNTLSGYPVANRRRSWTGFRGFNQEGQSCPIISSSSDLVNLIVSVEDTGVGIPLDSQPRVFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFSSIPKIGSTFSFTALFTNACASDEYKFQQINKKPNSSFADFKGMTALLVDHRSVRAKVSRYHIQRLGIQVNIVSDLNHGLSSTSNFSTNVDAVFIEQEIWDLDPAISALFAISLKKSDNMASPKVFILSDSFSNLRTSSSSFSVLSPAVITKPLRSSMLAASLQRAMGVGNKGNACNGEIPSFSLHNLLLGRKILVVDDNNVNLKVAAGALKKYGADVVCEIRGNNAISLLTPPHHFDACFMDIQMPEMDGFEVTKQVREIEHRTNNRLQSGELSVELYKNISNWHLPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFHSSSGTL 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22382722 22388102 + Bpe018357.1 Bpe05g00945 104722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00945 1063 Coils Coil 423 443 - -
Bpe05g00945 1063 Gene3D CHASE domain 140 391 IPR042240 -
Bpe05g00945 1063 PRINTS Bacterial sensor protein C-terminal signature 704 722 IPR004358 GO:0016310|GO:0016772
Bpe05g00945 1063 PRINTS Bacterial sensor protein C-terminal signature 687 697 IPR004358 GO:0016310|GO:0016772
Bpe05g00945 1063 PRINTS Bacterial sensor protein C-terminal signature 669 683 IPR004358 GO:0016310|GO:0016772
Bpe05g00945 1063 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 519 739 IPR036890 -
Bpe05g00945 1063 ProSiteProfiles Histidine kinase domain profile. 453 744 IPR005467 -
Bpe05g00945 1063 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 433 531 IPR036097 GO:0000155|GO:0007165
Bpe05g00945 1063 ProSiteProfiles Response regulatory domain profile. 771 893 IPR001789 GO:0000160
Bpe05g00945 1063 SMART HisKA_10 446 530 IPR003661 GO:0000155|GO:0007165
Bpe05g00945 1063 Gene3D - 414 528 - -
Bpe05g00945 1063 SMART HKATPase_4 577 744 IPR003594 -
Bpe05g00945 1063 SUPERFAMILY CheY-like 917 1056 IPR011006 -
Bpe05g00945 1063 ProSiteProfiles Response regulatory domain profile. 919 1056 IPR001789 GO:0000160
Bpe05g00945 1063 SUPERFAMILY CheY-like 766 894 IPR011006 -
Bpe05g00945 1063 Gene3D - 87 139 - -
Bpe05g00945 1063 Gene3D - 529 745 IPR036890 -
Bpe05g00945 1063 PANTHER HISTIDINE KINASE 3 36 1058 - -
Bpe05g00945 1063 CDD REC_hyHK_CKI1_RcsC-like 920 1052 - -
Bpe05g00945 1063 SMART CHASE_2 136 359 IPR006189 -
Bpe05g00945 1063 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 577 742 IPR003594 -
Bpe05g00945 1063 CDD HATPase_EvgS-ArcB-TorS-like 582 742 - -
Bpe05g00945 1063 Pfam Response regulator receiver domain 920 1051 IPR001789 GO:0000160
Bpe05g00945 1063 PANTHER TWO-COMPONENT HISTIDINE KINASE 36 1058 - -
Bpe05g00945 1063 Gene3D - 914 1060 - -
Bpe05g00945 1063 CDD HisKA 446 526 IPR003661 GO:0000155|GO:0007165
Bpe05g00945 1063 Pfam CHASE domain 139 236 IPR006189 -
Bpe05g00945 1063 Pfam CHASE domain 256 357 IPR006189 -
Bpe05g00945 1063 SMART REC_2 918 1052 IPR001789 GO:0000160
Bpe05g00945 1063 ProSiteProfiles CHASE domain profile. 136 384 IPR006189 -
Bpe05g00945 1063 Pfam His Kinase A (phospho-acceptor) domain 446 530 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00945 Bpe-Chr5:22382722 Bpe15g00478 Bpe-Chr15:16103551 1.44E-09 dispersed
Bpe02g00521 Bpe-Chr2:3397178 Bpe05g00945 Bpe-Chr5:22382722 1.00E-12 transposed
Bpe03g00033 Bpe-Chr3:566964 Bpe05g00945 Bpe-Chr5:22382722 0 transposed
Bpe14g00730 Bpe-Chr14:5663226 Bpe05g00945 Bpe-Chr5:22382722 0 transposed
Bpe04g00886 Bpe-Chr4:5931196 Bpe05g00945 Bpe-Chr5:22382722 1.25E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21492 PF02518 HATPase_c 6.60E-28 CL0025 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00945 K14489 - jre:109003197 1526.15