Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00972 ATGGCTCCTCCGGTAAAATCTTTCAGGCAAGGCTACAAGGATTCTGAAGAATCTGATACGCCGTCGAACAGTCTTTGGGTCGGCAATTTGGCTACGGATGTTACTGATTCGGATTTGATGGCGCTCTTTGCTCGGTACGGTGCCCTTGACAGCGTCATATCATATTCGTCTAGGAGCTACGCGTTCGTCTTCTTCAAGCGCGTGGAGGATGCACAAGCGGCGAAGAACGCTCTTCAAGGGGCTGTTGTTCGTGGCGTTTCGATCAAAATCGAGTTTGCGAGACCGGCAAAATCTTGTCTGATTTTAGATTTTCTTCGATCGCAACCGTCAAGAAGAGATCAGCGGTCTGACTTCAGGGATGGACAGTTTCAGGGTCGAAACATGGGGCTGGCGGATATTCAGTCGGGTAATAAAAGACAACTGCCTTCTCATTTTGTCGAAGGACCTAGAGGAGAGAGTCAACCCAGTAAAGTTTTGTGGGTTGGATATCCAGCTTCTGTTCAAATTGATGAACAAATGCTCCATAATGCCATGATTTTGTTTGGCGAGATTGAGAAGATTAAGAGTTTTCCATCTAGACATTATTCATTTGTGGAATTTAGAAGTATTGATGAAGCAAGGCGAGCTAAAGAGGGCTTGCAGGGTAGACTTTTTAACGATCCTCGAATTACAATAATGTTTTCAAATAGTGAGCTGGCGCCTGGAAAAGATTACTCAGGTGTTTATGGTGGTGCAAAGGGCTCTAGGCCTGAGATTTTTCTCAATGAACGTTTAGATGTTTTGAGTCATAATCATCCATTGGTGTCAAATAATTTTACCGGATTGGTTCCATCTGGTGCCTCTCTAGGACCAAATATGCTGATGAGACCATTTGGTCATGGTAATTTGGAACCGCTTCTTCCTGGCCCTGATTTTAATGAGTTTCCAGCACCTCATAGTCTTCAGGATGCAAATAGCAAGAATTTTATGGGTCCAAATTTGAGCAGGTTGTCTCCCTCAGCAGGCATTCTTTCATCTCCTGCACCTGGTATTCAATCCTCTATGAGATCCTCAATAAATACATGGGATGTTTTGGACAAAACCCAATTTGAAAGGGACTCTAAAAGGTTGAGGGTGGATGCTTCTTCACATATGGGTGATACTGCTTTTCCATCAAGAAAAATAGACCAGGGTTTGGGACCAGATCAACAATACAGATTCGGACCAATTGCAGAAGGACGTGTTTCTGTTCCTTTTACGAATGCCACAGGGAGGAATCGCATTAGTCCTGTTGGTGCAAATGTGACTACAAGTGGGCCTGTCCAACCACACCCTGATAATGATTTTGTGTGGCGTGGGATGATTGCAAAGGGAGGAACACCGGTTTGTCATGCTCGGTGTGTTCCCATTGGAAAAGGGATCAGCAGTGAGCTTCCCGAAGTTGTTAATTGTTCTGCTCGAACCGGTTTGGATCAGCTCACTAAACACTATGCTGAAGCTGTTGGATTTGATGTTGTTTTTTTCTTGCCAGATAGTGAAGACGATTTTGCATCTTACACGGAATTCCTGCACTATCTGGGTGGAAAAAACCGTGCTGGGGTTGCGAAGTTTGATAATGGTACTACTTTGTTTTTGGTTCCTCCTTCTGATTTTTTAAGAAAAGTTTTGAAAGTTGGAGGACCAGAGCGATTATATGGTGTTGTTCTCATATTTCCACAAGCTCCTAACAGTGAACCCCCGCCACCTCAATTAAATCTTCCTATTCCACCTCAGTATATTGAGAGAAAACAAGTTCTATCTGTTCCAGGTGAGTACGATCAAATTCCCTTGAAAGATGAGCGACTTCCACCGCCTGATTATACTAGACCTCTTCATGAGAACTCCAAAGCCTCTTCTAAACCATTGTTTTCGTCTGTAAATGAGTCACTGCCAGTGCAGTCAATGGCCCAAAGCAGTATTGCATCAGCGTCTCAAGCTGGAGTTTCATTAACACCTGAGCTTATTGCCACTTTAGCTTCGTTAATACCTGGGAAGAATCAGTCATCTACCATAGATAGCTCTAAGCTACCATCAGGATCATCCACCATCAGACCTTCACTTCCTCCTCCTGGGTTACAAGATCAACAAGCAGCTGTCCATACAGGTCATTCTTTTCCCCAAGTGGGTATTCATGCTAATATACAAGGGCAAAGTTATTTGCAATATAAGTCCTACCCCTCCTTCTCAAGTATGCCTAGCAACCCTGCACAGTTGGTCAATGGAAGTGCCTCGATGCAAGATTCAACTGCCAGCCAGACACAGCAGGTTCCTCTTCCTCCCAGGCCTATGACTAATTATTCCTCCCCTGAAAGTGGTCAAGCTCCTAATACGCTGATGGCTAATCCTCAGTATCAGCAAGATGTTTCTCGTACTACTCTGGGAGCTTATGGGGCAGTACATGGAGTTGACCTCTCTGCGCAAAGTCCATTGGTGCTGCAACAATTGACCAACTATACTTCCTTACCTAATCAGGGTCAGAGTGCTAATTATTCACAACCCCAAACCACAACTCAATTAACAGCCGACAGAGTGAACACCGAGCTTCCTAATCAGGTACAACAGATACAATCTGGTGGAATGGGTACTGGGATGCCAGAGGTTGAGGTTGACAAGAACCAGAGATATCAATCAACTCTCCAATTTGCAGCTAGCTTATTGCAACAGATCCAGCAGCAACAAGCAGCCCGCAATTCTTGA 2715 44.49 MAPPVKSFRQGYKDSEESDTPSNSLWVGNLATDVTDSDLMALFARYGALDSVISYSSRSYAFVFFKRVEDAQAAKNALQGAVVRGVSIKIEFARPAKSCLILDFLRSQPSRRDQRSDFRDGQFQGRNMGLADIQSGNKRQLPSHFVEGPRGESQPSKVLWVGYPASVQIDEQMLHNAMILFGEIEKIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMFSNSELAPGKDYSGVYGGAKGSRPEIFLNERLDVLSHNHPLVSNNFTGLVPSGASLGPNMLMRPFGHGNLEPLLPGPDFNEFPAPHSLQDANSKNFMGPNLSRLSPSAGILSSPAPGIQSSMRSSINTWDVLDKTQFERDSKRLRVDASSHMGDTAFPSRKIDQGLGPDQQYRFGPIAEGRVSVPFTNATGRNRISPVGANVTTSGPVQPHPDNDFVWRGMIAKGGTPVCHARCVPIGKGISSELPEVVNCSARTGLDQLTKHYAEAVGFDVVFFLPDSEDDFASYTEFLHYLGGKNRAGVAKFDNGTTLFLVPPSDFLRKVLKVGGPERLYGVVLIFPQAPNSEPPPPQLNLPIPPQYIERKQVLSVPGEYDQIPLKDERLPPPDYTRPLHENSKASSKPLFSSVNESLPVQSMAQSSIASASQAGVSLTPELIATLASLIPGKNQSSTIDSSKLPSGSSTIRPSLPPPGLQDQQAAVHTGHSFPQVGIHANIQGQSYLQYKSYPSFSSMPSNPAQLVNGSASMQDSTASQTQQVPLPPRPMTNYSSPESGQAPNTLMANPQYQQDVSRTTLGAYGAVHGVDLSAQSPLVLQQLTNYTSLPNQGQSANYSQPQTTTQLTADRVNTELPNQVQQIQSGGMGTGMPEVEVDKNQRYQSTLQFAASLLQQIQQQQAARNS 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22570936 22577011 + Bpe018384.1 Bpe05g00972 104749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00972 904 MobiDBLite consensus disorder prediction 739 784 - -
Bpe05g00972 904 Coils Coil 878 898 - -
Bpe05g00972 904 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 223 IPR000504 GO:0003723
Bpe05g00972 904 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 87 IPR000504 GO:0003723
Bpe05g00972 904 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 95 IPR000504 GO:0003723
Bpe05g00972 904 Gene3D - 149 239 IPR012677 -
Bpe05g00972 904 CDD RRM3_Spen 25 94 - -
Bpe05g00972 904 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 230 IPR000504 GO:0003723
Bpe05g00972 904 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 1 99 - -
Bpe05g00972 904 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 102 901 - -
Bpe05g00972 904 Pfam SPOC domain 437 555 IPR012921 -
Bpe05g00972 904 Gene3D - 5 140 IPR012677 -
Bpe05g00972 904 CDD RRM3_Spen 159 229 - -
Bpe05g00972 904 MobiDBLite consensus disorder prediction 672 695 - -
Bpe05g00972 904 SUPERFAMILY RNA-binding domain, RBD 143 230 IPR035979 GO:0003676
Bpe05g00972 904 SUPERFAMILY RNA-binding domain, RBD 13 123 IPR035979 GO:0003676
Bpe05g00972 904 MobiDBLite consensus disorder prediction 600 630 - -
Bpe05g00972 904 MobiDBLite consensus disorder prediction 1 22 - -
Bpe05g00972 904 SMART rrm1_1 158 226 IPR000504 GO:0003723
Bpe05g00972 904 SMART rrm1_1 24 91 IPR000504 GO:0003723
Bpe05g00972 904 MobiDBLite consensus disorder prediction 672 704 - -
Bpe05g00972 904 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 99 - -
Bpe05g00972 904 PANTHER RNA RECOGNITION MOTIF-CONTAINING 102 901 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00972 - - - zju:107405094 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00972 Bpe-Chr5:22570936 Bpe07g00693 Bpe-Chr7:13556618 6.45E-07 dispersed
Bpe04g00900 Bpe-Chr4:6038532 Bpe05g00972 Bpe-Chr5:22570936 3.62E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00972 Bpe_Chr05 FPKM 2.480496 2.631759 2.16275 2.452238 4.340158 3.170556 4.750751 2.266914 2.331626 2.952388