Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00973 GAGATGGAGCTGGAAGCAGTGGGAGATTTAGCTCTAAACATAATTCTGACGAAAGTAGGTCCAAGAGACACTGCCAGGTTCGCTTGTGTCAGTAGGAAATTCAGATCTTCGGCTTCTGAAGATGCCCTCTGGTTCAAATTTTCCAGTGAAGACCTTGATCTTTCCGACCCTCTTGATCCTTTCGGAAACCCCTCTCCTTCATTCAAGGCAGCTTATCAAGTATGGAGAGAAGCCTTTGGTATGTATCCATGGCCCCTCGTGTTAAGAGTCAAGAGATGTTGGAGCAGACTGAAAAAGTGGCTGAGATCGAATTTTTCCGAGGCTGAGGCTACACTGGGAAAAGGGGCATCGGAGGCTGACATTCGAGAGTTGGAGAATTCCTTGAAAGTGAAATTGCCTCTTCCGACGCGGCTTCTCTACCGCTTTCATAACGGTCAAATGCTTGAAGAGGATGAATTCATGTCAAGTTTTGGAAGTCCATTGGGTCTCATTGGTGGCTATTCTTTCTATAAACAATTAGTCAATGTCTATTTGTTACCCTTGAATCAGATGATTTCAGAAACAAATGGGATCACGAGGCATCTTGGTTTTTCAGCAAGGTCTAAGTATGTTCTTGTGGCTGCCTCTTCTACGGATGTCAGAAAACTCTTCTTTCTCAACTGCACGACTGGTCAACTCCATGTCGGTACCAGGAATCTTGAAATTGATGGAGAAATGATGCCTTGTGTGCCAAATGAGCTGATAACTTCAGTTCATGACTCTAACTCGTGTAACCAACAAGATGCTATGCTACTATGGTTGGAAGAGCACGCTAATCGCCTAGAGAATGGCTTAATTAAAGTTCGTGATGAAGAGGGCATCAAATGCATCAGTCTGTTTCCAGAAGAACCGCCCGTCTGTTCTACAGCCATAACCCATGGTGTAAAGGTTCGTGCTTCAGCGCTATTCGTACCAGAGTTAACTAACCTTCAAGATGATGCAGAGAAGTACTTTTTTACTTACTCGATCCGCATGTCTCTTCAACCCGAAGGATGTATTATAAATGGGATTTTGTTTGAGTCTTGTCAATTGTATTGGAGGCGGTGGGTAATCCGTGCAAATGATGCGGTGAAATCCGATTTTAATGGAGAAGCCGTGATTGGAAAGTACCCACTCTTGCACCCGGATGGAAACGAGTTTGTTTATGAAAGTTGTTCGCCAATTGAGTCGGCTTCGGGTTCCATGGAAGGCTCTTTCACTTTTATCCCTGGCAGTTTGAGGGACTCGAAAGGTAGCCCATTCGAGGTCGAAGTGGCAAGGTTTCCGCTCCAAGTGCCAGACTACATTTACTGA 1332 44.82 EMELEAVGDLALNIILTKVGPRDTARFACVSRKFRSSASEDALWFKFSSEDLDLSDPLDPFGNPSPSFKAAYQVWREAFGMYPWPLVLRVKRCWSRLKKWLRSNFSEAEATLGKGASEADIRELENSLKVKLPLPTRLLYRFHNGQMLEEDEFMSSFGSPLGLIGGYSFYKQLVNVYLLPLNQMISETNGITRHLGFSARSKYVLVAASSTDVRKLFFLNCTTGQLHVGTRNLEIDGEMMPCVPNELITSVHDSNSCNQQDAMLLWLEEHANRLENGLIKVRDEEGIKCISLFPEEPPVCSTAITHGVKVRASALFVPELTNLQDDAEKYFFTYSIRMSLQPEGCIINGILFESCQLYWRRWVIRANDAVKSDFNGEAVIGKYPLLHPDGNEFVYESCSPIESASGSMEGSFTFIPGSLRDSKGSPFEVEVARFPLQVPDYIY 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22580205 22582414 + Bpe018385.1 Bpe05g00973 104750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00973 443 SUPERFAMILY ApaG-like 304 443 IPR036767 -
Bpe05g00973 443 Pfam ApaG domain 323 415 IPR007474 -
Bpe05g00973 443 Gene3D ApaG domain 301 443 IPR036767 -
Bpe05g00973 443 ProSiteProfiles ApaG domain profile. 302 443 IPR007474 -
Bpe05g00973 443 Pfam F-box domain 12 46 IPR001810 GO:0005515
Bpe05g00973 443 SUPERFAMILY SMI1/KNR4-like 93 172 IPR037883 -
Bpe05g00973 443 SUPERFAMILY F-box domain 13 73 IPR036047 GO:0005515
Bpe05g00973 443 PANTHER F-BOX PROTEIN SKIP16 2 443 - -
Bpe05g00973 443 Gene3D - 92 230 IPR037883 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00973 K10290 FBXO3; F-box protein 3 - jre:108985081 619.002
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00973 Bpe-Chr5:22580205 Bpe13g00244 Bpe-Chr13:10407660 1.10E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1271 Blo01g00192 . . Bda08g00159 . . . . . . . . . . . . . Bhi01g01191 . . . Hepe05g1298 . Lcy11g1257 . . . . . . . . . . . . . . . . . . . Bpe05g00973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011929 1 2 1 1 1 0 1 0 0 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 2 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00973 Bpe_Chr05 FPKM 4.27835 0.0 0.0 0.0 0.0 3.607258 0.0 5.438507 6.062287 0.0