Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00975 ATGAAAATACAGTGTGATGTGTGCGAGAAAGCTCCGGCGACGGTGATTTGCTGCACAGACGAGGCGGCGCTGTGCGCCAAATGCGACGGCGAAGTACATGCAGCGAACAAGCTGGCAAGCAAGCACCAGAGGCTTCCCCTTCACTGCCTCCCCGGCAAGCTCCCCAAATGCGACATATGCCAAGAAAAGACTGCATTCATATTCTGTGTTGAAGATAGAGCACTGTTTTGTGAAGATTGTGATGAGCCAATTCACTCTACCAACAGCCTTTCAAGAAACCATCAACGGTTCCTAGCCACTGGAATCAGGATAGCTCCAAGCTCGAGCTGCTCAAATGAGATAAAAAAGAGGCCAACAGAGCCTCCAAATCCAAAGAAACAACTGGTTTCTCCGAATCCTTCGCAACAATGGACTGTTGATGACTTCCTCTGTTTTTCAGAATTCGAAATCCCCGACAAGAAAGAGCAGCTTGAGTTTGGAGAACTCGAATGGTTATCCGAGATGGGTATCTTAGGTGGGCAGATTTCTCGAGCAACAATGGCCACAGCCGAAGTTCCTGAGCTTCCTAGATTGCAGCCAAGTAACACCTCATACGGACCAGCCAAATTGTCACAGCCTTTGAAGAAGCCTCGGATCGAAACCTCTGGCAAAGACGAGGACTATTTTACCGTCCCTGATCTTGGTTGGGTATAA 693 48.63 MKIQCDVCEKAPATVICCTDEAALCAKCDGEVHAANKLASKHQRLPLHCLPGKLPKCDICQEKTAFIFCVEDRALFCEDCDEPIHSTNSLSRNHQRFLATGIRIAPSSSCSNEIKKRPTEPPNPKKQLVSPNPSQQWTVDDFLCFSEFEIPDKKEQLEFGELEWLSEMGILGGQISRATMATAEVPELPRLQPSNTSYGPAKLSQPLKKPRIETSGKDEDYFTVPDLGWV 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22602529 22604204 + Bpe018387.1 Bpe05g00975 104752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00975 230 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bpe05g00975 230 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 228 - -
Bpe05g00975 230 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bpe05g00975 230 MobiDBLite consensus disorder prediction 109 134 - -
Bpe05g00975 230 MobiDBLite consensus disorder prediction 190 214 - -
Bpe05g00975 230 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 228 - -
Bpe05g00975 230 Gene3D Classic Zinc Finger 1 96 - -
Bpe05g00975 230 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Bpe05g00975 230 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Bpe05g00975 230 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bpe05g00975 230 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bpe05g00975 230 CDD Bbox1_BBX-like 5 47 - -
Bpe05g00975 230 CDD Bbox1_BBX-like 56 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00902 Bpe05g00975 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00975 Bpe-Chr5:22602529 Bpe09g00270 Bpe-Chr9:2009553 3.44E-43 dispersed
Bpe04g00902 Bpe-Chr4:6044861 Bpe05g00975 Bpe-Chr5:22602529 5.02E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21495 PF00643 zf-B_box 1.00E-07 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00975 - - cit:102626697 322.398