Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00976 ATGGCTTCCACCAATGGTTCGACTTCCGGATTGATTGTTAGCTTCGGGGAGATGTTGATCGATTTTGTTCCTACCGTTTCCGGCGTCTCCTTGGCCGAAGCCCCTGGTTTTCTTAAGGCTCCGGGAGGTGCTCCGGCCAATGTTGCGATCGCTGTGAGCAGACTCGGAGGCAAGGCGGCTTTCGTCGGAAAGCTCGGAGACGATGAGTTCGGCCACATGCTCGCTGGGATCTTGAAGGAAAACGGCGTCTCTGGCGACGGGATCAGCTTCGACGAGGGCGCTAGAACCGCCTTGGCTTTCGTTACTCTTCGCGCTGACGGCGAGCGGGAGTTCATGTTCTACCGTAATCCTAGCGCCGACATGTTGTTGAAGCCTGAAGAGCTCAATCTTGAGCTGATCAGATCCGCAAAAGTGTTTCACTACGGATCCATCAGCTTGATCGTGGAGCCATGCAGATCGGCTCATATTAAGGCTATGCAGGCGGCCAAGGACGCCGGAGCACTTCTCTCCTACGACCCTAATCTTCGTCTGCCTCTGTGGCCTTCCGCTAAGGAGGCTCGCGAGCAGATCTTGAGCATATGGGACAAAGCTGAAGTTATCAAGGTTAGCGATGTGGAGTTGGAGTTCCTCACTGGAAGTAACAAAATTGATGATGAATCCGCATTGTCATTGTGGCATGATAATCTCAAGCTCCTCCTCGTCACTCTTGGGGAGCACGGCTGCAGATACTACACCAAGAGTTTCCGAGGATCCGTGGAGGCTTTCCACGTGAAAGCAATCGACACGACCGGGGCCGGTGACTCGTTCGTCGGTGCTTTGCTACGCAAGATTGTCGACGATCAATCCATCCTCGAACATCACACAAAAAACAAGAAGTGCTTCGTTTGCAACCAGCCTACGCTTGGGATATTCAATACAGCCCAAGAAATAAAGAAAAGGATGGCTGCCGAAGGTAAATAG 960 52.6 MASTNGSTSGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVSGDGISFDEGARTALAFVTLRADGEREFMFYRNPSADMLLKPEELNLELIRSAKVFHYGSISLIVEPCRSAHIKAMQAAKDAGALLSYDPNLRLPLWPSAKEAREQILSIWDKAEVIKVSDVELEFLTGSNKIDDESALSLWHDNLKLLLVTLGEHGCRYYTKSFRGSVEAFHVKAIDTTGAGDSFVGALLRKIVDDQSILEHHTKNKKCFVCNQPTLGIFNTAQEIKKRMAAEGK 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22607354 22612685 - Bpe018388.1 Bpe05g00976 104753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00976 319 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 261 274 IPR002173 GO:0016773
Bpe05g00976 319 Gene3D - 9 294 IPR029056 -
Bpe05g00976 319 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 42 66 IPR002173 GO:0016773
Bpe05g00976 319 SUPERFAMILY Ribokinase-like 12 285 IPR029056 -
Bpe05g00976 319 PANTHER BNAA04G18320D PROTEIN 18 286 - -
Bpe05g00976 319 Pfam pfkB family carbohydrate kinase 11 284 IPR011611 -
Bpe05g00976 319 PRINTS Ribokinase signature 37 56 IPR002139 GO:0016301
Bpe05g00976 319 PRINTS Ribokinase signature 232 243 IPR002139 GO:0016301
Bpe05g00976 319 PANTHER HEXOKINASE FAMILY MEMBER 18 286 - -
Bpe05g00976 319 CDD bac_FRK 11 277 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00976 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - pvy:116135378 517.694
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00903 Bpe05g00976 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00976 Bpe-Chr5:22607354 Bpe13g00907 Bpe-Chr13:15088831 2.60E-121 dispersed
Bpe03g00325 Bpe-Chr3:4822679 Bpe05g00976 Bpe-Chr5:22607354 1.48E-36 transposed
Bpe04g00903 Bpe-Chr4:6049220 Bpe05g00976 Bpe-Chr5:22607354 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00976 Bpe_Chr05 FPKM 4.459779 3.95237 10.279127 9.8747 19.822002 15.231789 16.198069 23.094152 20.846062 22.129879