Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00977 TTCGAAGAAATGAAGAAATTGATAGCTCTAGGATTTGAAGGTTCCGCCAATAAGATTGGTGTTGGAGTCGTAACTTTAGATGGCGACATTTTGTCTAACCCACGCCACACTTACATCACACCTCCTGGCCATGGATTTCTCCCTCGTGAAACTGCACAACACCATTTCCAGCATGTTCTTCCCTTGATCAAATCTGCTCTAGAAACTGCGGGTATTACTCCCGAAGAAATTGATTGCCTTTGCTATACCAAAGGACCCGGAATGGGGGCACCTCTGCAAGTTGCTGCCATTGTTGTAAGGATTCTATCTCAGTTGTGGAAGAAGCCTATTGTTGCTGTTAATCACTGTGTTGCCCATATTGAGATGGGCAGGATTGTGACCGGTGCAGATGATCCTGTTGTTCTGTACGTGAGTGGCGGCAATACACAGGTAATCGCATATAGTGAAGGAAGGTATCGGATCTTTGGCGAGACGATTGATATCGCTGTTGGAAATTGTTTGGATCGATTTGCTCGGGTATTGACTCTCTCCAACGACCCGAGCCCGGGATATAATATCGAGCAGCTTGCAAAAAAAGGCAAACAATTTATAGAAATTCCTTACGTCGTGAAAGGGATGGACGTATCATTTAGTGGAATATTAAGCTTTGTTGAAGCAACTGCTGTGGAAAAGCTCAAGAATAATGAGTGCACCCCAGCTGATTTGTGTTATTCCCTGCAGGAAACATTATTTGCCATGCTCGTGGAGATCACTGAAAGAGCAATGGCCCATTGTGAAAAGAAAGACGTTCTTATAGTTGGTGGGGTCGGCTGCAATGAACGGCTGCAAGAAATGATGAGAATAATGTGTAGCGAACGTGGTGGGAGGTTGTTTGCTACCGATGACAGGTATTGTGTCGATAATGGAGCAATGATTGCTTATACTGGTCTTCTTGCTTTTGCCCATGGCATAACAACTCCAATAGAGGAAGCGACTTTCACCCAGAGGTTCCGAACCGATGAGGTTCATGCGATATGGAGAGAACAAAAGGAATTGGCGGAAAAGGATGGGCTTTCATCTATGGCTTCTTGA 1071 44.82 FEEMKKLIALGFEGSANKIGVGVVTLDGDILSNPRHTYITPPGHGFLPRETAQHHFQHVLPLIKSALETAGITPEEIDCLCYTKGPGMGAPLQVAAIVVRILSQLWKKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGKQFIEIPYVVKGMDVSFSGILSFVEATAVEKLKNNECTPADLCYSLQETLFAMLVEITERAMAHCEKKDVLIVGGVGCNERLQEMMRIMCSERGGRLFATDDRYCVDNGAMIAYTGLLAFAHGITTPIEEATFTQRFRTDEVHAIWREQKELAEKDGLSSMAS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22614500 22616503 + Bpe018389.1 Bpe05g00977 104754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00977 356 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 33 307 IPR000905 -
Bpe05g00977 356 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 10 23 IPR017861 -
Bpe05g00977 356 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 IPR017861 -
Bpe05g00977 356 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 80 100 IPR017861 -
Bpe05g00977 356 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 101 120 IPR017861 -
Bpe05g00977 356 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 133 145 IPR017861 -
Bpe05g00977 356 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 155 176 IPR017861 -
Bpe05g00977 356 Gene3D - 10 312 - -
Bpe05g00977 356 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 3 342 IPR000905 -
Bpe05g00977 356 CDD NBD_sugar-kinase_HSP70_actin 10 178 - -
Bpe05g00977 356 Gene3D - 131 293 - -
Bpe05g00977 356 SUPERFAMILY Actin-like ATPase domain 9 306 IPR043129 -
Bpe05g00977 356 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED 3 342 IPR034680 GO:0000408|GO:0002949
Bpe05g00977 356 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [kae1]. 7 340 IPR034680 GO:0000408|GO:0002949
Bpe05g00977 356 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 10 306 IPR017861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00977 K01409 OSGEP, KAE1, QRI7; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] - egr:104434007 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00977 Bpe-Chr5:22614500 Bpe14g00896 Bpe-Chr14:6685484 6.56E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1229 Blo01g00198 . . Bda08g00155 . . . Bma05g01168 . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0844 Cone11ag0664 . . . . . . . . Bpe05g00977 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007916 1 3 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 0 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00977 Bpe_Chr05 FPKM 56.589836 58.028248 1384.806763 1353.517212 1135.141113 1107.469482 1070.823975 140.084213 133.733292 127.748917