Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00982 ATGGACTCCGATGATGATATGCACGACGCCCACGACGCCGAGTCTTTGGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGCGATGATGACGATGTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATCTTGATAAAATCGAGTTTGGTCGCCAGGAGATAAATTATACGATATTGAAAGAATCTGATATACGGGAACGACAAGAGGATGATATTATGAGAATATCTACAGTACTTTCAATTTCACGTGTTGCAGCTACCATCTTACTTCGCCACTTTAATTGGAGTGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAATGCAACTTGGCTTGTTGGATGCTCCAGTTCAGATTTTAAATGGTTGTGAAGTTACTTGTGGGATATGTTTTGACTTCTATCCTATGGGTGGGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGAAACATCCTCAACATACATTCTTATTCTCTGCTTTGATTTTTTAATTGTGATAGGTTACATTGGAACATCCATTAATGATGGTCCTGGATGTTTACTGTTGAGATGCCCTGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGACAGGGAAAAGTATTCTCGATATCTCCTGAGGTCTTTTGTTGAAGACAATAAAAAGGATAGTGTCTTATTTAAGAAAACAGTTGAGAAAGAAAAAGTTTTCAATTTCCTGGTAGGCCTGAGCAAAGACTTGGATGAGGTACGAGAACGGATACTTAGTCGAGATCTTCTCTTAAGTACTCGTGAGGTGTTTGCTGAAGTACGCAGAGAGGAAAGTCGTCGACAGTGTACGGAGGAAGCTCACCGTCCCGTAGACTGTGGTACTGTAGAGAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAATTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCATGGGTGCATGCATATGACGTGCACACCACCTTGTAAATTCGAATTTTGCTGGCTATGCCTAGGTGTATGGTCTGATCATGGTGAGAGAACAGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGTGTGTATGATGAAGCCGAGAGAAGAAGGGAAATGGCTAAAAGCTCTCTAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAAAAAGCTCTAGCGGATTTGTATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACACACAATGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGCTACAGATAATTGAGTGTAGGCGGGTTCTGAAGTGGACATATGCATATGGGTACTATCTTCCAGAAAATGACCAAGCTAAAAGACAGTTTTTTGAGTACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTGCAACAGTTCCTCGCAGCTGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTTGCGGAACTTGCAGCGGGACGAGCAGCGCTAAGACTGCTGCTGGAAGCATCAAAGTAAAACCTGGAAGGAGCAAGGGAAATTCTGTGCGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCTAGTTTTTGGTCGTGTGATCTATGTACCTATGCCAATCATACGGCGGCAACTACTTGCCAGATGTGCCTCCAACGAAGGTGA 1878 42.44 MDSDDDMHDAHDAESLDDDFYSGDFDYCSDDDDVEADESVEEDVDDLDKIEFGRQEINYTILKESDIRERQEDDIMRISTVLSISRVAATILLRHFNWSVSKVHDEWFADEERVRMQLGLLDAPVQILNGCEVTCGICFDFYPMGGIKSAACGHPFCTSCWKETSSTYILILCFDFLIVIGYIGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDREKYSRYLLRSFVEDNKKDSVLFKKTVEKEKVFNFLVGLSKDLDEVRERILSRDLLLSTREVFAEVRREESRRQCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKSSLERYTHYYERWASNQSSRQKALADLYQMETVHIEKLSDTQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENDQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDACGTCSGTSSAKTAAGSIKVKPGRSKGNSVRTSGSSRNVDNSSFWSCDLCTYANHTAATTCQMCLQRR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22642353 22654896 - Bpe018393.2 Bpe05g00982 104759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00982 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 294 573 IPR031127 GO:0004842|GO:0016567
Bpe05g00982 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 39 239 IPR031127 GO:0004842|GO:0016567
Bpe05g00982 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Bpe05g00982 625 SMART zf_4 600 624 IPR001876 -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 19 39 - -
Bpe05g00982 625 ProSiteProfiles TRIAD supradomain profile. 131 383 IPR044066 -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 1 18 - -
Bpe05g00982 625 Gene3D - 301 556 - -
Bpe05g00982 625 SUPERFAMILY Ran binding protein zinc finger-like 598 624 IPR036443 -
Bpe05g00982 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 294 573 - -
Bpe05g00982 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 39 239 - -
Bpe05g00982 625 SUPERFAMILY RING/U-box 132 234 - -
Bpe05g00982 625 Pfam Ariadne domain 392 553 IPR045840 -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 573 596 - -
Bpe05g00982 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 170 IPR013083 -
Bpe05g00982 625 SUPERFAMILY RING/U-box 324 372 - -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 1 39 - -
Bpe05g00982 625 Pfam IBR domain, a half RING-finger domain 322 369 IPR002867 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00982 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - vvi:100257000 831.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00982 Bpe-Chr5:22642353 Bpe14g00030 Bpe-Chr14:495938 5.86E-91 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe07g00414 . 107 533 ARIADNE family AT4G34370 70.0 1.7e-174 609.0
Bpe07g00414 . 1 483 ARIADNE family AT2G16090 73.9 2.2e-218 755.0
Bpe07g00414 . 1 482 ARIADNE family AT3G27710 61.0 4.7e-174 607.8
Bpe07g00414 . 1 466 ARIADNE family AT3G27720 52.1 2.7e-136 482.3
Bpe14g00030 . 9 636 ARIADNE family AT1G05890 54.2 2.9e-201 698.4
Bpe05g00982 . 58 572 ARIADNE family AT1G05890 63.2 6.4e-188 654.1
Bpe14g00030 . 18 640 ARIADNE family AT1G65430 65.6 6.0e-236 813.5
Bpe05g00982 . 17 625 ARIADNE family AT1G65430 59.3 3.5e-204 708.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g00982 Bpe_Chr05 FPKM 5.996825 8.371823 0.884965 1.093202 22.568804 21.952505 26.263399 0.0 0.0 0.0