Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00982 ATGGACTCCGATGATGATATGCACGACGCCCACGACGCCGAGTCTTTGGATGATGATTTCTACAGCGGAGACTTTGATTATTGCAGCGATGATGACGATGTCGAAGCTGACGAATCGGTCGAGGAAGATGTCGATGATCTTGATAAAATCGAGTTTGGTCGCCAGGAGATAAATTATACGATATTGAAAGAATCTGATATACGGGAACGACAAGAGGATGATATTATGAGAATATCTACAGTACTTTCAATTTCACGTGTTGCAGCTACCATCTTACTTCGCCACTTTAATTGGAGTGTTAGTAAAGTGCATGATGAGTGGTTTGCTGATGAAGAAAGAGTGAGAATGCAACTTGGCTTGTTGGATGCTCCAGTTCAGATTTTAAATGGTTGTGAAGTTACTTGTGGGATATGTTTTGACTTCTATCCTATGGGTGGGATCAAATCAGCAGCTTGTGGTCATCCTTTTTGCACTTCATGTTGGAAAGAAACATCCTCAACATACATTCTTATTCTCTGCTTTGATTTTTTAATTGTGATAGGTTACATTGGAACATCCATTAATGATGGTCCTGGATGTTTACTGTTGAGATGCCCTGATCCATCTTGTGGTGCTGCTGTTGGTCGAGACATGATTAATTTGTTGGCTTGCAATGAAGACAGGGAAAAGTATTCTCGATATCTCCTGAGGTCTTTTGTTGAAGACAATAAAAAGGATAGTGTCTTATTTAAGAAAACAGTTGAGAAAGAAAAAGTTTTCAATTTCCTGGTAGGCCTGAGCAAAGACTTGGATGAGGTACGAGAACGGATACTTAGTCGAGATCTTCTCTTAAGTACTCGTGAGGTGTTTGCTGAAGTACGCAGAGAGGAAAGTCGTCGACAGTGTACGGAGGAAGCTCACCGTCCCGTAGACTGTGGTACTGTAGAGAAGTGGATTATGAAGAACAGTGCTGAATCTGAAAATATGAATTGGATTTTAGCTAATTCCAAGCCATGTCCAAAGTGTAAGCGGCCAATTGAGAAGAACCATGGGTGCATGCATATGACGTGCACACCACCTTGTAAATTCGAATTTTGCTGGCTATGCCTAGGTGTATGGTCTGATCATGGTGAGAGAACAGGTGGTTTTTATGCCTGTAATCGTTATGAAACAGCTAAACAAGAAGGTGTGTATGATGAAGCCGAGAGAAGAAGGGAAATGGCTAAAAGCTCTCTAGAGAGATACACCCATTACTATGAACGTTGGGCAAGCAATCAGTCGTCAAGACAAAAAGCTCTAGCGGATTTGTATCAAATGGAAACTGTACATATTGAGAAACTTAGTGACACACAATGCACTCCTGAATCTCAGCTCAAATTCATAACAGAGGCCTGGCTACAGATAATTGAGTGTAGGCGGGTTCTGAAGTGGACATATGCATATGGGTACTATCTTCCAGAAAATGACCAAGCTAAAAGACAGTTTTTTGAGTACTTGCAAGGCGATGCAGAGTCTAATTTAGAAAGGCTTCATCAATGTGCAGAGAAGGAACTGCAACAGTTCCTCGCAGCTGACGGGCCATCAAAAGAATTTAATGATTTTCGTACAAAGTTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTCAGAGCTTTAGAAAATGGTCTCTCGGATGTGGATGCTTGCGGAACTTGCAGCGGGACGAGCAGCGCTAAGACTGCTGCTGGAAGCATCAAAGTAAAACCTGGAAGGAGCAAGGGAAATTCTGTGCGCACCAGTGGTTCGAGCCGAAATGTGGATAATTCTAGTTTTTGGTCGTGTGATCTATGTACCTATGCCAATCATACGGCGGCAACTACTTGCCAGATGTGCCTCCAACGAAGGTGA 1878 42.44 MDSDDDMHDAHDAESLDDDFYSGDFDYCSDDDDVEADESVEEDVDDLDKIEFGRQEINYTILKESDIRERQEDDIMRISTVLSISRVAATILLRHFNWSVSKVHDEWFADEERVRMQLGLLDAPVQILNGCEVTCGICFDFYPMGGIKSAACGHPFCTSCWKETSSTYILILCFDFLIVIGYIGTSINDGPGCLLLRCPDPSCGAAVGRDMINLLACNEDREKYSRYLLRSFVEDNKKDSVLFKKTVEKEKVFNFLVGLSKDLDEVRERILSRDLLLSTREVFAEVRREESRRQCTEEAHRPVDCGTVEKWIMKNSAESENMNWILANSKPCPKCKRPIEKNHGCMHMTCTPPCKFEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDEAERRREMAKSSLERYTHYYERWASNQSSRQKALADLYQMETVHIEKLSDTQCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPENDQAKRQFFEYLQGDAESNLERLHQCAEKELQQFLAADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDACGTCSGTSSAKTAAGSIKVKPGRSKGNSVRTSGSSRNVDNSSFWSCDLCTYANHTAATTCQMCLQRR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22642353 22654896 - Bpe018393.2 Bpe05g00982 104759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00982 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 294 573 IPR031127 GO:0004842|GO:0016567
Bpe05g00982 625 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 39 239 IPR031127 GO:0004842|GO:0016567
Bpe05g00982 625 ProSitePatterns Zinc finger RanBP2-type signature. 602 621 IPR001876 -
Bpe05g00982 625 SMART zf_4 600 624 IPR001876 -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 19 39 - -
Bpe05g00982 625 ProSiteProfiles TRIAD supradomain profile. 131 383 IPR044066 -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 1 18 - -
Bpe05g00982 625 Gene3D - 301 556 - -
Bpe05g00982 625 SUPERFAMILY Ran binding protein zinc finger-like 598 624 IPR036443 -
Bpe05g00982 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 294 573 - -
Bpe05g00982 625 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 39 239 - -
Bpe05g00982 625 SUPERFAMILY RING/U-box 132 234 - -
Bpe05g00982 625 Pfam Ariadne domain 392 553 IPR045840 -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 573 596 - -
Bpe05g00982 625 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 170 IPR013083 -
Bpe05g00982 625 SUPERFAMILY RING/U-box 324 372 - -
Bpe05g00982 625 MobiDBLite consensus disorder prediction 1 39 - -
Bpe05g00982 625 Pfam IBR domain, a half RING-finger domain 322 369 IPR002867 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00982 Bpe-Chr5:22642353 Bpe14g00030 Bpe-Chr14:495938 5.86E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00982 K11968 - vvi:100257000 831.632