Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe05g00997 | ATGGGGTTTCCGGTTGGGTATACGGAGGTCTTCTTCCCCAATCTCTTTCTCCATCTGCTTTCTCTACTGGGTTACATCAGAAGCCTCATTTCGTCTCTCTTCCACTTTCTGGGTCTCTCCGATTTTGTCGAAACAGACGCCGTTTGGCCCGAAGCGCAGAGCCGAGTCTCCGATTCTCCCTGCGTGTCGGCGCTCCTGATCCGAGAATTGCTGCCGGTCATCAAGTTTTCGGAGCTCGTAGCGGCTTCCGGCGGAGGAGAGTCTCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAAGGAGGGGAGGAGATCAGACGACTCGCAAACTGTAAGCACATTTTCCACAGAGATTGCTTGGACCGGTGGATGGATCATGATCAGAAAACGTGTCCTCTCTGTAGGACACCATTTTTGCCGGACGAGATGCAGAACGAGCTAAATCAGCGGCTATGGGCGGCCCCCGGAGCATCAGATTTTTACAGTGAATACAGTTCCGTCTGA | 504 | 53.37 | MGFPVGYTEVFFPNLFLHLLSLLGYIRSLISSLFHFLGLSDFVETDAVWPEAQSRVSDSPCVSALLIRELLPVIKFSELVAASGGGESPESCAVCLYEFEGGEEIRRLANCKHIFHRDCLDRWMDHDQKTCPLCRTPFLPDEMQNELNQRLWAAPGASDFYSEYSSV | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 22739853 | 22740356 | - | Bpe018408.1 | Bpe05g00997 | 104774 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe05g00997 | 167 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 142 | IPR013083 | - | |
| Bpe05g00997 | 167 | SMART | ring_2 | 92 | 134 | IPR001841 | - | |
| Bpe05g00997 | 167 | CDD | mRING-H2-C3H2C2D_ZSWM2 | 91 | 135 | - | - | |
| Bpe05g00997 | 167 | Pfam | Ring finger domain | 91 | 135 | IPR001841 | - | |
| Bpe05g00997 | 167 | SMART | ringv_2 | 91 | 135 | IPR011016 | GO:0008270 | |
| Bpe05g00997 | 167 | ProSiteProfiles | Zinc finger RING-type profile. | 92 | 135 | IPR001841 | - | |
| Bpe05g00997 | 167 | SUPERFAMILY | RING/U-box | 91 | 141 | - | - | |
| Bpe05g00997 | 167 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 165 | - | - | |
| Bpe05g00997 | 167 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 165 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe02g02009 | Bpe-Chr2:21758000 | Bpe05g00997 | Bpe-Chr5:22739853 | 1.27E-14 | dispersed | |
| Bpe05g00997 | Bpe-Chr5:22739853 | Bpe11g00663 | Bpe-Chr11:5093079 | 5.44E-61 | dispersed | |
| Bpe13g01047 | Bpe-Chr13:16138526 | Bpe05g00997 | Bpe-Chr5:22739853 | 1.13E-15 | dispersed | |
| Bpe11g00378 | Bpe-Chr11:2864512 | Bpe05g00997 | Bpe-Chr5:22739853 | 1.57E-14 | transposed | |
| Bpe04g00921 | Bpe-Chr4:6147586 | Bpe05g00997 | Bpe-Chr5:22739853 | 2.02E-96 | wgd | |
| Bpe05g00651 | Bpe-Chr5:20298763 | Bpe05g00997 | Bpe-Chr5:22739853 | 4.18E-50 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe05g00997 | K16281 | - | zju:107432943 | 279.641 |