Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g00997 ATGGGGTTTCCGGTTGGGTATACGGAGGTCTTCTTCCCCAATCTCTTTCTCCATCTGCTTTCTCTACTGGGTTACATCAGAAGCCTCATTTCGTCTCTCTTCCACTTTCTGGGTCTCTCCGATTTTGTCGAAACAGACGCCGTTTGGCCCGAAGCGCAGAGCCGAGTCTCCGATTCTCCCTGCGTGTCGGCGCTCCTGATCCGAGAATTGCTGCCGGTCATCAAGTTTTCGGAGCTCGTAGCGGCTTCCGGCGGAGGAGAGTCTCCGGAGAGCTGCGCTGTTTGTCTCTACGAGTTCGAAGGAGGGGAGGAGATCAGACGACTCGCAAACTGTAAGCACATTTTCCACAGAGATTGCTTGGACCGGTGGATGGATCATGATCAGAAAACGTGTCCTCTCTGTAGGACACCATTTTTGCCGGACGAGATGCAGAACGAGCTAAATCAGCGGCTATGGGCGGCCCCCGGAGCATCAGATTTTTACAGTGAATACAGTTCCGTCTGA 504 53.37 MGFPVGYTEVFFPNLFLHLLSLLGYIRSLISSLFHFLGLSDFVETDAVWPEAQSRVSDSPCVSALLIRELLPVIKFSELVAASGGGESPESCAVCLYEFEGGEEIRRLANCKHIFHRDCLDRWMDHDQKTCPLCRTPFLPDEMQNELNQRLWAAPGASDFYSEYSSV 167
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 22739853 22740356 - Bpe018408.1 Bpe05g00997 104774
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g00997 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Bpe05g00997 167 SMART ring_2 92 134 IPR001841 -
Bpe05g00997 167 CDD mRING-H2-C3H2C2D_ZSWM2 91 135 - -
Bpe05g00997 167 Pfam Ring finger domain 91 135 IPR001841 -
Bpe05g00997 167 SMART ringv_2 91 135 IPR011016 GO:0008270
Bpe05g00997 167 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
Bpe05g00997 167 SUPERFAMILY RING/U-box 91 141 - -
Bpe05g00997 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Bpe05g00997 167 PANTHER BRH1 RING FINGER PROTEIN 1 165 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02009 Bpe-Chr2:21758000 Bpe05g00997 Bpe-Chr5:22739853 1.27E-14 dispersed
Bpe05g00997 Bpe-Chr5:22739853 Bpe11g00663 Bpe-Chr11:5093079 5.44E-61 dispersed
Bpe13g01047 Bpe-Chr13:16138526 Bpe05g00997 Bpe-Chr5:22739853 1.13E-15 dispersed
Bpe11g00378 Bpe-Chr11:2864512 Bpe05g00997 Bpe-Chr5:22739853 1.57E-14 transposed
Bpe04g00921 Bpe-Chr4:6147586 Bpe05g00997 Bpe-Chr5:22739853 2.02E-96 wgd
Bpe05g00651 Bpe-Chr5:20298763 Bpe05g00997 Bpe-Chr5:22739853 4.18E-50 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g00997 K16281 - zju:107432943 279.641