Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01038 ATGGAGAAAGAGGATCTGTTTTCCGAGCTATGGCAAGCTTGCGCAGGGCCACTGGTAGACGTTCCTCGTCGAGGAGAAAGAGTTTTCTACTTTCCTCAGGGTCACTTAGAACAACTGGAGGCGTCAACAAATCAGCAGCTGAATCAGAAAATTCCTCGTTTTGATCTGCCTTCCAAGATTCTCTGTCGTGTTGTTGACATTCAATTGATGGCAGAAAAAGAAACTGATGAGGTTTACGCTCAGATCACTCTGCTTCCAGAAATAGATCAGAGTGAGCCTGAAAGTCCAGATCCCAATCCGGACGAATGCCCGAGGCATACAATCCATTCATTTTGCAAGATTTTGACAGCTTCTGATACAAGCACTCACGGTGGATTCTCAGTTTTACGGAAGCACGCCACGGATTGCCTGCCTTCTCTGGACATGAGCCAGCCTATACCGACTCAAGAATTAGTTGCCAAAGATCTTCATGGGTACGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTCGAAGGCATTTGCTCACTACGGGATGGAGTACTTTTGTGACTTCGAAGAGACTACTAGCAGGCGACGCCTTTGTGTTTTTAAGGGGCGATAACGGGGAGTTAAGGGTTGGAGTTCGTCGCCATGCTCGTCAACAGGCTCCAATGCCGGCATCTGTGATATCCAGTCACAGCATGCATCTTGGAGTTCTCGTCACTGCCTCACATGCTTTTCGAACTCAAACGCGTTTCGTCGTTTATTACAAGCCGAGGACAAGCCAATTCATTATTGGCTTCAACAAATATCTTGAATCCGTAAAGAACGGGTTTTCGATTGGGATGCGTTTTAAGATGCAGTTTGAGGGAGAGGAATCTTCAGAAAGAAGGTTTACAGGAACTATTGTTGGAGTCGGAGATATTTCTCCTCAGTGGTCCGATTCTAAATGGCGATCATTGAAGATTCAATGGGACGAGCCTTCAACCATTCCTAGGCCGGAGAGGGTCTCTTCTTGGGAGATAGAACATTTTGTGCCTTCTGCTTCATTAAGCTTTGGTCAACCCATCACGAAAAGTAAACGGGTCAGGCCAGTCGAAATACCATCTTCTGAATTAACTTCTGGAACGCATGCTTCATCGTTTTGGTACCATGGATCGACTCCTCCCAATGATGGGCCCCAGCCACGGAATATTTTGGAAGTCCATCCGAGGCAGACCGACGGTGGAAACTGGACATCTTCCCCTTGTCTTAATGTCTCGCTAAACCTTTTCACGGACTCTATAGGGGACAAAGAGTATGGACCATCTCGATCCATTCTCTCTGAGTATGTTTCTCCGACATCCCCATGTCCGAAAAATAGTGTTCCACTAAATAGTCAGTCACATAAAGATCATAAATCAAATACTTCTCCTTGCTGCCGACTGTTCGGAATTGATTTGTTAAAAAACTCGAACAGCACTTTGCATGTTGAGAAACCTTCACCGTGCACAACAATGGCCACCAGTGGGATCAAAGAGCCCGTTTCAGATGCTTTTCAAGCCAATACATCACCAAAAGAGGTGATAAGCCAAAAAGGTAACAATCTGGCCTCGAGAATTCGTACGAAGGTTCAAATGCAAGGCATGGCTGTTGGTCGGGCTGTCGACTTGGCAACCTTCAAAGGATACGACCATCTTATAGAAGAGCTCGAGAATATATTTGAAATTAAAGGAGAGCTTCATTCGCAAGAAAAATGGGCAGTTGTTTTTACCGATGATGAAAACGACATGATGCTCGTGGGGGACGATCCATGGCCAGAATTCTGTAAAATGGTGAAGAAAATATGCATTTTTTTGAGGGAAGAAGTGAAGAAGATGGGTTCTAAACTGGAGCTCCCTCCACCATCACCACCACCACCACCACCGTCACCGTTAGACTGTCAAACGACTGTTCTGAGCTTGGATTAA 1932 45.55 MEKEDLFSELWQACAGPLVDVPRRGERVFYFPQGHLEQLEASTNQQLNQKIPRFDLPSKILCRVVDIQLMAEKETDEVYAQITLLPEIDQSEPESPDPNPDECPRHTIHSFCKILTASDTSTHGGFSVLRKHATDCLPSLDMSQPIPTQELVAKDLHGYEWRFKHIYRGQPRRHLLTTGWSTFVTSKRLLAGDAFVFLRGDNGELRVGVRRHARQQAPMPASVISSHSMHLGVLVTASHAFRTQTRFVVYYKPRTSQFIIGFNKYLESVKNGFSIGMRFKMQFEGEESSERRFTGTIVGVGDISPQWSDSKWRSLKIQWDEPSTIPRPERVSSWEIEHFVPSASLSFGQPITKSKRVRPVEIPSSELTSGTHASSFWYHGSTPPNDGPQPRNILEVHPRQTDGGNWTSSPCLNVSLNLFTDSIGDKEYGPSRSILSEYVSPTSPCPKNSVPLNSQSHKDHKSNTSPCCRLFGIDLLKNSNSTLHVEKPSPCTTMATSGIKEPVSDAFQANTSPKEVISQKGNNLASRIRTKVQMQGMAVGRAVDLATFKGYDHLIEELENIFEIKGELHSQEKWAVVFTDDENDMMLVGDDPWPEFCKMVKKICIFLREEVKKMGSKLELPPPSPPPPPPSPLDCQTTVLSLD 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22955782 22959118 + Bpe018450.1 Bpe05g01038 104815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01038 643 MobiDBLite consensus disorder prediction 373 396 - -
Bpe05g01038 643 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 623 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bpe05g01038 643 Gene3D - 524 615 - -
Bpe05g01038 643 PANTHER AUXIN RESPONSE FACTOR 11 3 623 - -
Bpe05g01038 643 ProSiteProfiles PB1 domain profile. 527 612 IPR000270 GO:0005515
Bpe05g01038 643 SMART B3_2 111 213 IPR003340 GO:0003677
Bpe05g01038 643 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Bpe05g01038 643 SUPERFAMILY DNA-binding pseudobarrel domain 103 240 IPR015300 -
Bpe05g01038 643 MobiDBLite consensus disorder prediction 619 634 - -
Bpe05g01038 643 Pfam AUX/IAA family 520 563 IPR033389 -
Bpe05g01038 643 Pfam AUX/IAA family 568 610 IPR033389 -
Bpe05g01038 643 Gene3D - 272 344 - -
Bpe05g01038 643 CDD B3_DNA 109 211 IPR003340 GO:0003677
Bpe05g01038 643 MobiDBLite consensus disorder prediction 373 388 - -
Bpe05g01038 643 SUPERFAMILY CAD & PB1 domains 520 603 - -
Bpe05g01038 643 Pfam Auxin response factor 237 316 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bpe05g01038 643 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Bpe05g01038 643 MobiDBLite consensus disorder prediction 616 643 - -
Bpe05g01038 643 Gene3D - 108 213 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g00952 Bpe05g01038 CCT
Bpe04g00952 Bpe05g01038 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01038 Bpe-Chr5:22955782 Bpe08g00146 Bpe-Chr8:773862 1.02E-21 dispersed
Bpe06g00495 Bpe-Chr6:16189131 Bpe05g01038 Bpe-Chr5:22955782 1.93E-112 transposed
Bpe13g00184 Bpe-Chr13:9759644 Bpe05g01038 Bpe-Chr5:22955782 7.15E-29 transposed
Bpe04g00952 Bpe-Chr4:6416456 Bpe05g01038 Bpe-Chr5:22955782 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21503 PF02362 B3 1.80E-21 CL0405 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01038 K14486 - qsu:112005008 812.757