Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01076 ATGGAAAGGTTGTTTCTGATGAATGAGGAATGCAATGCTGCTCCAATAACCTGGAATTTCTCATCGTTTGACGTGGATTTCCAGAAATACGACCTGAATTCTGCGTCTGACCAGCTCCAGAGCTGTTTTTCGAGTGCGGATTGGGAAAATTCGGTTGAGCTGTGTGATCCTCTTGAGTCTGCTTTGAGCTCCATTGTTTCTTCTCCGGCGGCGTCCAATGTCGGCGCTAGCTTTAATTCCGGTGGAGATAAACTAATTGTTAGGCAACTAATAGGGAGGCTGGGAAGCATTTGCGAAGTCGGCGACGTTCCAACGCTGGAGTACATTGGGGGAAAGAAGGACAATACTGACCCCTCGTATTACAGTACGCCATTAAATTCTCCTCCGAAGCTCAATCTGTCAGTGGAAATTCGAGAAGCCAAAGGTCATTCGTCATTTTTTGATACCAATGTTCTAATCCATCCAAGCTTGAAGCCATTTTCTTCGGACCCTGAGTTTGCCCCGAGAGCTGCTATGTTTTCATCCTTAGCCGCTAGAAATGGAGGTCTCAGTAAAGAGATTCCAACGATTCCGGATATCGAATCTCAAATTGCTGCTCAAGAGCACAGAAAAAGCTCGATTCAGTGTAGAACTTCACTTAGTAAGAAATCAAGAAAGTTGCCTAGATCTCTTGGCCGTGAAAATACAGAGAGAGGCGACTCTCGAGAAGGATCTTCTTTGTCTGAGCAAATCTCCTGCAGCGAATCGGCCATGAAAGAGAAAGATGAAGTTGATCTGAACCACAGAAAAAGAAAATTGATTTCAAATATTGAAGGTAGAAACGACGGACCAAATCCAGGCGAAACCTCTGTAACAAAAAATGATGGAACAAAGACGAAGACAAAAACAAATGAAGGCAAAAAACCAGGAGAAGATGAAAATCAGAAGAGCACAAAGCTTCCGGAGCCTCCAATGGATTATATCCATGTCAGAGCAAGAAGAGGTCAAGCTACAGACAGCCATAGTCTCTCAGAGAGAGTTAGAAGAGAAAAAATCAGCGAAAGGATGAAGTTTCTACAAGATCTCGTCCCTGGTTTCAATAAGGTGACAGGAAAAGCAGTGATGCTTGATGAAATTATAAATTATGTTCAATCATTACAACGCCAGGTTGAGTTTCTTTCAATGAAGCTGGCATCAGTTCCTCCAAGAATGAATCTGAACATGGAAGCTCTTCTATTGAAAGATGTAAGAAAAATCGCCATTAACAGATTCATAGTTCAACATTTTCTTTAA 1272 42.37 MERLFLMNEECNAAPITWNFSSFDVDFQKYDLNSASDQLQSCFSSADWENSVELCDPLESALSSIVSSPAASNVGASFNSGGDKLIVRQLIGRLGSICEVGDVPTLEYIGGKKDNTDPSYYSTPLNSPPKLNLSVEIREAKGHSSFFDTNVLIHPSLKPFSSDPEFAPRAAMFSSLAARNGGLSKEIPTIPDIESQIAAQEHRKSSIQCRTSLSKKSRKLPRSLGRENTERGDSREGSSLSEQISCSESAMKEKDEVDLNHRKRKLISNIEGRNDGPNPGETSVTKNDGTKTKTKTNEGKKPGEDENQKSTKLPEPPMDYIHVRARRGQATDSHSLSERVRREKISERMKFLQDLVPGFNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVPPRMNLNMEALLLKDVRKIAINRFIVQHFL 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23265050 23266738 + Bpe018491.1 Bpe05g01076 104853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01076 423 MobiDBLite consensus disorder prediction 275 290 - -
Bpe05g01076 423 PANTHER TRANSCRIPTION FACTOR BHLH63 87 408 - -
Bpe05g01076 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 327 398 IPR036638 GO:0046983
Bpe05g01076 423 MobiDBLite consensus disorder prediction 220 237 - -
Bpe05g01076 423 MobiDBLite consensus disorder prediction 248 270 - -
Bpe05g01076 423 Pfam Helix-loop-helix DNA-binding domain 333 380 IPR011598 GO:0046983
Bpe05g01076 423 Gene3D - 326 400 IPR036638 GO:0046983
Bpe05g01076 423 CDD bHLH_AtBPE_like 319 404 - -
Bpe05g01076 423 MobiDBLite consensus disorder prediction 291 312 - -
Bpe05g01076 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 379 IPR011598 GO:0046983
Bpe05g01076 423 MobiDBLite consensus disorder prediction 201 316 - -
Bpe05g01076 423 SMART finulus 335 385 IPR011598 GO:0046983
Bpe05g01076 423 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 408 IPR024097 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01076 Bpe-Chr5:23265050 Bpe13g00756 Bpe-Chr13:14089584 1.49E-108 dispersed
Bpe04g01000 Bpe-Chr4:6981592 Bpe05g01076 Bpe-Chr5:23265050 3.87E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21512 PF00010 HLH 1.40E-05 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01076 - - tcc:18602600 353.599