Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01079 CAAATCAATACGAAAATGTCGGTTTCATCGACTGCCTTCTCTCCGGATCACGTCTCACCTTTAGACCAACTCCGTTACGTCTATTGCAACTTCTGCGACACTGTCCTGGCGGTGAGTGTTCCTTCCAGTAGCTTGTTCAAGACTGTTACCGTTCGATGTGGTCACTGCACCAATCTTCTGTCTATGAACATGCGGGGCCATCTACTTCCTGCTTCTAACCAGCTTCATCAGCTAGGACACTCTTTCTTCTCCCCTCAAAATCTTCTGGATGAGATGAGAAATCTGCCTTCAAATGTAATGCTGAATCAGCCAAAGCCGACAGATCAGCCCACTATGCCCATGATTCGAGGAGCTGAAGAACTTCCAAGACCTCCAGTTGCTAATAGACCTCCGGAGAAGAGACAAAGAGTCCCATCTGCGTACAATCGCTTCATCAAGGATGAAATCCAACGAATCAAAGCTCGCAATCCTGATATAAGTCACAGAGAGGCTTTCAGTGCTGCTGCAAAGAACTGGGCCCACTTCCCAAACATTCACTTCGGACTCATCCCTGATCAACACGTGAAGAAACCAAACATATGTCAGCAGGATGGAGAAAATGTGTTAATGAAAGATGGTATTTTTGCTCCAGCAAATGTGGGTGTGTCGCCTTTTTAA 657 46.27 QINTKMSVSSTAFSPDHVSPLDQLRYVYCNFCDTVLAVSVPSSSLFKTVTVRCGHCTNLLSMNMRGHLLPASNQLHQLGHSFFSPQNLLDEMRNLPSNVMLNQPKPTDQPTMPMIRGAEELPRPPVANRPPEKRQRVPSAYNRFIKDEIQRIKARNPDISHREAFSAAAKNWAHFPNIHFGLIPDQHVKKPNICQQDGENVLMKDGIFAPANVGVSPF 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23283427 23285259 + Bpe018494.1 Bpe05g01079 104856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01079 218 Gene3D High mobility group box domain 125 177 IPR036910 -
Bpe05g01079 218 Pfam YABBY protein 21 182 IPR006780 GO:0007275
Bpe05g01079 218 SUPERFAMILY HMG-box 126 176 IPR036910 -
Bpe05g01079 218 PANTHER PROTEIN YABBY 4 6 216 - -
Bpe05g01079 218 PANTHER PROTEIN YABBY 6-RELATED 6 216 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00592 Bpe-Chr5:19976884 Bpe05g01079 Bpe-Chr5:23283427 6.13E-94 dispersed
Bpe05g01079 Bpe-Chr5:23283427 Bpe11g00259 Bpe-Chr11:1881777 2.48E-94 dispersed
Bpe13g01156 Bpe-Chr13:17012747 Bpe05g01079 Bpe-Chr5:23283427 3.29E-36 dispersed
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g01079 Bpe-Chr5:23283427 1.10E-39 transposed
Bpe04g01012 Bpe-Chr4:7094515 Bpe05g01079 Bpe-Chr5:23283427 2.29E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21513 PF04690 YABBY 3.40E-69 CL0114 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01079 K25796 - sind:105171079 350.517