Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01079 CAAATCAATACGAAAATGTCGGTTTCATCGACTGCCTTCTCTCCGGATCACGTCTCACCTTTAGACCAACTCCGTTACGTCTATTGCAACTTCTGCGACACTGTCCTGGCGGTGAGTGTTCCTTCCAGTAGCTTGTTCAAGACTGTTACCGTTCGATGTGGTCACTGCACCAATCTTCTGTCTATGAACATGCGGGGCCATCTACTTCCTGCTTCTAACCAGCTTCATCAGCTAGGACACTCTTTCTTCTCCCCTCAAAATCTTCTGGATGAGATGAGAAATCTGCCTTCAAATGTAATGCTGAATCAGCCAAAGCCGACAGATCAGCCCACTATGCCCATGATTCGAGGAGCTGAAGAACTTCCAAGACCTCCAGTTGCTAATAGACCTCCGGAGAAGAGACAAAGAGTCCCATCTGCGTACAATCGCTTCATCAAGGATGAAATCCAACGAATCAAAGCTCGCAATCCTGATATAAGTCACAGAGAGGCTTTCAGTGCTGCTGCAAAGAACTGGGCCCACTTCCCAAACATTCACTTCGGACTCATCCCTGATCAACACGTGAAGAAACCAAACATATGTCAGCAGGATGGAGAAAATGTGTTAATGAAAGATGGTATTTTTGCTCCAGCAAATGTGGGTGTGTCGCCTTTTTAA 657 46.27 QINTKMSVSSTAFSPDHVSPLDQLRYVYCNFCDTVLAVSVPSSSLFKTVTVRCGHCTNLLSMNMRGHLLPASNQLHQLGHSFFSPQNLLDEMRNLPSNVMLNQPKPTDQPTMPMIRGAEELPRPPVANRPPEKRQRVPSAYNRFIKDEIQRIKARNPDISHREAFSAAAKNWAHFPNIHFGLIPDQHVKKPNICQQDGENVLMKDGIFAPANVGVSPF 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23283427 23285259 + Bpe018494.1 Bpe05g01079 104856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01079 218 Gene3D High mobility group box domain 125 177 IPR036910 -
Bpe05g01079 218 Pfam YABBY protein 21 182 IPR006780 GO:0007275
Bpe05g01079 218 SUPERFAMILY HMG-box 126 176 IPR036910 -
Bpe05g01079 218 PANTHER PROTEIN YABBY 4 6 216 - -
Bpe05g01079 218 PANTHER PROTEIN YABBY 6-RELATED 6 216 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01079 K25796 YAB; plant-specific transcription factor YABBY family protein - sind:105171079 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00592 Bpe-Chr5:19976884 Bpe05g01079 Bpe-Chr5:23283427 6.13E-94 dispersed
Bpe05g01079 Bpe-Chr5:23283427 Bpe11g00259 Bpe-Chr11:1881777 2.48E-94 dispersed
Bpe13g01156 Bpe-Chr13:17012747 Bpe05g01079 Bpe-Chr5:23283427 3.29E-36 dispersed
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g01079 Bpe-Chr5:23283427 1.10E-39 transposed
Bpe04g01012 Bpe-Chr4:7094515 Bpe05g01079 Bpe-Chr5:23283427 2.29E-100 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g443 Blo01g00279 . . Bda08g00564 . Bpe05g01079 . . . . Cma06g00763 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g00784 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g01366 . 2 163 C2C2-YABBY Transcription Factor Family AT1G69180 56.1 2.6e-44 175.3
Bpe05g01079 . 64 218 C2C2-YABBY Transcription Factor Family AT2G45190 64.8 2.0e-51 198.7
Bpe05g00592 BCT,CCT 63 218 C2C2-YABBY Transcription Factor Family AT2G45190 53.6 2.8e-40 161.8
Bpe11g00259 CCT 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 4.7e-40 161.0
Bpe07g00159 BCT,CCT 62 217 C2C2-YABBY Transcription Factor Family AT2G45190 50.9 2.2e-37 152.1
Bpe01g00275 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 58.5 8.9e-56 213.4
Bpe05g00592 BCT,CCT 20 192 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 2.1e-44 175.6
Bpe11g00259 CCT 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 8.7e-43 170.2
Bpe07g00159 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 55.0 1.1e-42 169.9
Bpe01g00747 BCT 9 172 C2C2-YABBY Transcription Factor Family AT1G08465 56.5 1.5e-42 169.5
Bpe02g02129 BCT 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.5 9.6e-42 166.8
Bpe08g00230 . 1 146 C2C2-YABBY Transcription Factor Family AT1G08465 61.8 1.2e-41 166.4
Bpe05g01079 . 22 195 C2C2-YABBY Transcription Factor Family AT1G08465 53.4 9.9e-39 156.8
Bpe05g01079 . 32 216 C2C2-YABBY Transcription Factor Family AT4G00180 54.5 3.5e-48 188.3
Bpe11g00259 CCT 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 51.9 2.5e-46 182.2
Bpe05g00592 BCT,CCT 30 216 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 3.1e-44 175.3
Bpe07g00159 BCT,CCT 29 209 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 2.9e-42 168.7
Bpe11g01781 . 3 186 C2C2-YABBY Transcription Factor Family AT1G23420 60.0 2.3e-41 166.0
Bpe02g02129 BCT 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 3.2e-65 244.6
Bpe01g00747 BCT 7 171 C2C2-YABBY Transcription Factor Family AT2G26580 67.9 4.2e-57 217.6
Bpe01g00275 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 2.7e-48 188.3
Bpe13g01156 . 7 152 C2C2-YABBY Transcription Factor Family AT2G26580 65.8 1.1e-44 176.4
Bpe05g00592 BCT,CCT 20 190 C2C2-YABBY Transcription Factor Family AT2G26580 52.9 1.6e-43 172.6
Bpe07g00159 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT2G26580 50.9 3.2e-41 164.9
Bpe11g00259 CCT 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.2e-41 164.5
Bpe05g01079 . 22 187 C2C2-YABBY Transcription Factor Family AT2G26580 53.0 3.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21513 PF04690 YABBY 3.40E-69 CL0114 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g01079 Bpe_Chr05 FPKM 32.24094 38.234867 25.314711 24.39728 33.584656 38.48885 36.186661 29.788528 30.005983 31.230316