Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01081 ATGCGACGGCTAATTGAATTTTGTGTTCTTCAGGATGTTTCTTCTCATTGTCTTCTTCCTCGATGGCTGGAGGCCCTCCTCTCTGAGAAATTCTTCAACGCTTGTATTTTTCATGAGAATGCAAAGAAGAACGAGAAGAACATCTTCTGCATAGACTGCTGCACCAGTATTTGCTCTCACTGTTTACCTCCTCATCGCTCTCACCGATTGTTGCAGATTAGGAGATATGTTTATCATGACGTTATAAGAATGGACGATGCTGCCAAATTAATCGACTGTTCGTTGGTTCAATCGTACACAACAAACAGTGCAAAAGTGGTGTTTTTGCATCAGCGAGCACAGACGAAGAACTTCAGAGGCTCCGGCAATGTCTGCACCACCTGCGACAGAAGCCTGCAAGACCAATATCTCTTCTGTTCTCTCTCCTGCAAGATACACTATCTAGTAAAAACGCAGGGGGAGCTGCTTTCGAAGTATCTGTTAGAGTGCACCTCTCTTCCATTACCGGAACCGGTGGTCGACGATGTTTTGATGACTCCGAACTCTGTCCTCGAACCGGCCGGTTCTACAAGAACATCTTCCGGCTCAGCTGGGCAACTCGGCGGCGACTGTAGAGCCTTAACATGCACTGCGACGACCGAAATTGTCAGAAAGAAAAGGAGCAGTATTTCGGCGCTTCGGCCTGTTTGCTCCCCGCCTTCCGAAATATCGGCGATGAACCTGAACCGGAGAAAACACTCCATTGAATTAACAATACTTGAATTGAAGAAGCAGAGTACATGTTCCATGCAATTAACCAACAAAACGGATAAATATGTGACATTTAAGGTTAAAACAACCAATCCCAAAAAATATTGCGTTCGTCCAAATTCTGGTGTCGTTTCACCTCGAACTTCCTGCAGTGTTACAGTTACCATGCAAGCACAAAAGGATATTCCTCTTGATATGCAGTGCAAAGACAAATTTCTCATCCAATGTGTTGCAGCACCGGATGGCACAACTGCGAAAGATGTGACTCCAGAATTGTTTAACAAGAGAGATGGTAACATTGTGGAAGAGTGCAAATTGCGGGTGGTTTATCTTCCTGCCAATCCTCCTTCACCTGTCCCTGAAGGATATGAAGAAGAATCTTCCCCCAGGGCTTCTGTTGTGGAAGATGGATACCAAAACCATTCATTTGATGACGTATTGGGATTTTTGGATGAGCCAAAAGACAAGTCATCAGAGGCATGCTCTATCATTTCCAAGTTGACTGAGGATAAAGCTGACGCATTACAACAGGGCGAGAAACTACGCCAAGAACTGGAACTGTTAAGAAAGGAAATTAGGAAAAGCCAAGCTGGGGGTATCTCTGTATTGTTCTTGGTGCTGGTTGGCCTGCTTGGAGTGCTGCTTGGCTATTTTGTGAAGAGAACGTAG 1419 45.03 MRRLIEFCVLQDVSSHCLLPRWLEALLSEKFFNACIFHENAKKNEKNIFCIDCCTSICSHCLPPHRSHRLLQIRRYVYHDVIRMDDAAKLIDCSLVQSYTTNSAKVVFLHQRAQTKNFRGSGNVCTTCDRSLQDQYLFCSLSCKIHYLVKTQGELLSKYLLECTSLPLPEPVVDDVLMTPNSVLEPAGSTRTSSGSAGQLGGDCRALTCTATTEIVRKKRSSISALRPVCSPPSEISAMNLNRRKHSIELTILELKKQSTCSMQLTNKTDKYVTFKVKTTNPKKYCVRPNSGVVSPRTSCSVTVTMQAQKDIPLDMQCKDKFLIQCVAAPDGTTAKDVTPELFNKRDGNIVEECKLRVVYLPANPPSPVPEGYEEESSPRASVVEDGYQNHSFDDVLGFLDEPKDKSSEACSIISKLTEDKADALQQGEKLRQELELLRKEIRKSQAGGISVLFLVLVGLLGVLLGYFVKRT 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23291457 23298208 + Bpe018496.1 Bpe05g01081 104858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01081 472 Coils Coil 238 258 - -
Bpe05g01081 472 PANTHER VESICLE-ASSOCIATED PROTEIN 1-3 253 470 - -
Bpe05g01081 472 Gene3D Immunoglobulins 238 364 IPR013783 -
Bpe05g01081 472 ProSiteProfiles Major sperm protein (MSP) domain profile. 228 361 IPR000535 -
Bpe05g01081 472 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 253 470 IPR016763 GO:0005789
Bpe05g01081 472 SUPERFAMILY PapD-like 253 372 IPR008962 -
Bpe05g01081 472 ProSiteProfiles Zinc finger B-box type profile. 35 73 IPR000315 GO:0008270
Bpe05g01081 472 Pfam MSP (Major sperm protein) domain 254 344 IPR000535 -
Bpe05g01081 472 Coils Coil 414 448 - -
Bpe05g01081 472 Pfam PLATZ transcription factor 74 145 IPR006734 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01081 - - - qsu:112010762 345.895
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g01081 Bpe14g01016 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01015 Bpe-Chr4:7140936 Bpe05g01081 Bpe-Chr5:23291457 1.02E-106 dispersed
Bpe05g00591 Bpe-Chr5:19965700 Bpe05g01081 Bpe-Chr5:23291457 3.70E-59 dispersed
Bpe05g01081 Bpe-Chr5:23291457 Bpe11g00268 Bpe-Chr11:1948297 4.71E-74 dispersed
Bpe08g00776 Bpe-Chr8:9645207 Bpe05g01081 Bpe-Chr5:23291457 2.61E-55 dispersed
Bpe11g00332 Bpe-Chr11:2419729 Bpe05g01081 Bpe-Chr5:23291457 3.60E-28 dispersed
Bpe13g01001 Bpe-Chr13:15774491 Bpe05g01081 Bpe-Chr5:23291457 9.47E-35 transposed
Bpe04g01014 Bpe-Chr4:7127789 Bpe05g01081 Bpe-Chr5:23291457 2.24E-133 wgd
Bpe05g00582 Bpe-Chr5:19898900 Bpe05g01081 Bpe-Chr5:23291457 3.26E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g982 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi15g416 . . . Bda08g00576 Bpe14g01016 Bpe05g01081 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0521 Cone15ag0548 Cone11ag0584 Cone18ag0924 Lsi05g02026 . . . . . . . . . . Bma06g01299 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005589 1 1 2 2 2 1 3 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 3 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21514 PF00635 Motile_Sperm 4.60E-29 CL0556 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g01081 Bpe_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0