Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01101 ATGAGCATACATAGGCACTCAAAAGAAAAGCATGGGGAAAATAGTGGCAATTCTCGTTTTGACCCTGCCGAAGAAAGTGCGGCTAGAACTAGGCCTTTCAGCTTTAAAGAGATCATGCTTAGAAGGAAAAACAAAGGATTGACTGAAAGTGTGGAATGTGGGGCAGCAGAACTAGGGAATACGCCTAAGGAAGTCAGGGTTGAGAATGTTCCTGATCATTATACAACTGAAGGGGGCCACATACGCGACAAAAGTTCTTCCCTTGATTTAGAAAATCTTGTTATCAAAGGATCGACCAAAGATGGTTCTAGAAGAAAGGAAGAACATAATTCCAGGAATGATGAAACTGTAATTACAAGAAGAGACAGGAAAGGAGAAAGTCATCCATCACCAATGCTTTTAAAGTCCAAGCTTACCAAAAATACCAAAGAAAAGGAGAGAGGGAAAACTGACCAAATAACATATGAATTGAGAAAAAACGAGAAGAGAGCTCGAGATGATTCTGAAAATAGAGCTGACAAGAAACGTAGGAATAAAACACATAGTGATAGACATGGGGATCGGAATAGAGAAAAGTATGCAGACAACAAGAGAAAATATCGAAATGAAGAAGACAATAAAAACAGACATAAAGATGATGGAAAGAGAAGAGATCCTATTAAACATCATTTTGAAGAATCTAGGTTGAATGAAAGACAATCAAGAAGTCGAGACGATCAGAATAAAAGTAGAAGATTGGTATCCGTCTCACCCAAAGGTCACAAACACTCATATAAGATGCTGGGGGTGCATAAGGATCTGTCCGTAAACTATGAAGATAAGTCTGAACAAAGGCGTTCTGATGTTGACAGAAACAGAATATCAACTAATGGTGCAAGTAGTTATCGACGACATAGTGAATCAACAAGTGGGCTCGGTGGTTATTCTCCTCGCAAGAGGAGAGTTGATAACTCTATCAAGACACCCCCTCCCCCTTATCGATCACCTGATAAGAAAAGTGCAAAGTGGGATCTCCCACCAATTGGAAAAGATTGCATATCTTCTGGTTCAGTTCTGTCCTTCCCTCAGTCAGTAAACAATGTGCTATCCTCAGATATATCCAACATAAGCATTGTTGCTCCTTCTCCTTCAACTTCCACTAAATCCATTATGACAGTTTCTACATCACCTTTGGCCATGAAGGGAAATGCTTCTGTTGATTTGATTCACCTGACTCAAGCTACTCGACCTCTGAGGAGGCTTTACATAGAAAATGTACCATCAACTGCAACTGAGAAGGCTCTTATGGAATGTCTTAATAAATTTCTGCTTTCTTCAGGTGTTAATCAGATTGCCGAAACCCAACCCTGTATTAGCTGTAATTTGCACAAGGAAAAGGGTCTTGCTCTTGTGGAGTTTCTTACCTCAGAGGATGCTTCAGCAGCTCTTTCTTTTGATGGCAGTTGTTTCGCTGACTCTATTCTCAAAATTCGACGCCCCAAGGACTTTTTGGAGCTGGCTCCAACCTTTTTATGTTCAGTTACTACTTCCATTTTGTGTTGGCTTCTGAGGTCAATTGTGGTTACTATTCATGTAGCAGGTTTTCAGACAGTTGCTATTTTCATGCAGACTGGCGAGCCTGAGAAATCTGTCGCTGTAGATACGATAAGCGAAGTTGTTGAGGATTCTCCAAATAAGATATTCATTGGTGGAATCTCAAAAGAACTATCTCCCAAAATGCTTAGGGAGATCATCACTGTATTTGGAGCTTTGAAGTCCTATCACTTTGTGATCAATGAGCATCTAAATGAACCAACTGCTTTCCTTGAGTATGCAGACCACTCCGTCACTCTCAAAGCTTGTGCGGGTCTCAATGGTATGAAGGTGGGTGGCCAAGTATTGACTGTTGTTCAAGCATGCCCATATGCATCCTCTTTGGAACGTACTAGGTATGCACCGTGTTATGACATCCCTGAGCATTCAAAGCCTCTTCTTGAACCACCAACACCAGTCCTAAAGCTTAAAAACGTGTTCGATCCAGCACAATTATTGACCCAAACAGAAGTAGACATGGAAGAAGTTCTTGAAGATATACGTGTGGAATGTGCTAGGTTTGGCGTTGTGAAGTCTGTAAATAATGTCAAGCTCAACGGCAGTTGTGTAATCACCAGAGGAGACACTGATAATATCAAAAACACAGAAACAAACACTTTCGAACAAGATGCTGATAGAACGACGGAAGTGGGCGATGCTGAATTTTCTGTAGATGGGAATGAGCGTGAAGAACTTGAAGTTGCAACAGATCGATCAAACTGTCTTCACAAGGGCGAACTATCAAATGATCTTGTAACGGACAAATCATATCTTGCAAACCACGTCTCCAATGACATGACTTGCAAAGATTGTGGCTGTGAGAATGAGTCGCCTGAAAATCCATTGGAATCTCGTGACCGGAAAGTAACTGAAATTATTCAAACGGATGAGAAATGCTCAGAAAACAAATTGCTATGCCGAGAGGAGCTGGTCACAGTTTTTGAGGCTGATACGAAGGAGGTCAGAGAATGTGAAGAAGATAAGGCGGAAGAGGTATTTGAAGAAGGATCCATCTTTGTAGAGTATAATAGAGCTGAATCAAGTTGCATGGCTGCGCATTGTTTGCATGGACGTGTTTTCGATGGCCGGATTGTCACCATTGAGTACGTAAGTCTTGATAAATACCTTGCGAGATTTCCAAAATAA 2718 41.1 MSIHRHSKEKHGENSGNSRFDPAEESAARTRPFSFKEIMLRRKNKGLTESVECGAAELGNTPKEVRVENVPDHYTTEGGHIRDKSSSLDLENLVIKGSTKDGSRRKEEHNSRNDETVITRRDRKGESHPSPMLLKSKLTKNTKEKERGKTDQITYELRKNEKRARDDSENRADKKRRNKTHSDRHGDRNREKYADNKRKYRNEEDNKNRHKDDGKRRDPIKHHFEESRLNERQSRSRDDQNKSRRLVSVSPKGHKHSYKMLGVHKDLSVNYEDKSEQRRSDVDRNRISTNGASSYRRHSESTSGLGGYSPRKRRVDNSIKTPPPPYRSPDKKSAKWDLPPIGKDCISSGSVLSFPQSVNNVLSSDISNISIVAPSPSTSTKSIMTVSTSPLAMKGNASVDLIHLTQATRPLRRLYIENVPSTATEKALMECLNKFLLSSGVNQIAETQPCISCNLHKEKGLALVEFLTSEDASAALSFDGSCFADSILKIRRPKDFLELAPTFLCSVTTSILCWLLRSIVVTIHVAGFQTVAIFMQTGEPEKSVAVDTISEVVEDSPNKIFIGGISKELSPKMLREIITVFGALKSYHFVINEHLNEPTAFLEYADHSVTLKACAGLNGMKVGGQVLTVVQACPYASSLERTRYAPCYDIPEHSKPLLEPPTPVLKLKNVFDPAQLLTQTEVDMEEVLEDIRVECARFGVVKSVNNVKLNGSCVITRGDTDNIKNTETNTFEQDADRTTEVGDAEFSVDGNEREELEVATDRSNCLHKGELSNDLVTDKSYLANHVSNDMTCKDCGCENESPENPLESRDRKVTEIIQTDEKCSENKLLCREELVTVFEADTKEVRECEEDKAEEVFEEGSIFVEYNRAESSCMAAHCLHGRVFDGRIVTIEYVSLDKYLARFPK 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23413146 23419904 - Bpe018517.1 Bpe05g01101 104878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01101 905 SMART rrm1_1 559 630 IPR000504 GO:0003723
Bpe05g01101 905 SMART rrm1_1 413 491 IPR000504 GO:0003723
Bpe05g01101 905 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 485 IPR000504 GO:0003723
Bpe05g01101 905 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 560 627 IPR000504 GO:0003723
Bpe05g01101 905 Coils Coil 158 178 - -
Bpe05g01101 905 SUPERFAMILY RNA-binding domain, RBD 412 495 IPR035979 GO:0003676
Bpe05g01101 905 MobiDBLite consensus disorder prediction 260 285 - -
Bpe05g01101 905 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 4 902 - -
Bpe05g01101 905 MobiDBLite consensus disorder prediction 98 130 - -
Bpe05g01101 905 PANTHER RNA-BINDING PROTEIN 4 902 - -
Bpe05g01101 905 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 495 IPR000504 GO:0003723
Bpe05g01101 905 MobiDBLite consensus disorder prediction 66 89 - -
Bpe05g01101 905 MobiDBLite consensus disorder prediction 1 33 - -
Bpe05g01101 905 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 558 634 IPR000504 GO:0003723
Bpe05g01101 905 SUPERFAMILY RNA-binding domain, RBD 550 637 IPR035979 GO:0003676
Bpe05g01101 905 MobiDBLite consensus disorder prediction 1 18 - -
Bpe05g01101 905 MobiDBLite consensus disorder prediction 184 245 - -
Bpe05g01101 905 MobiDBLite consensus disorder prediction 286 306 - -
Bpe05g01101 905 MobiDBLite consensus disorder prediction 138 176 - -
Bpe05g01101 905 Gene3D - 549 639 IPR012677 -
Bpe05g01101 905 Gene3D - 813 903 IPR012677 -
Bpe05g01101 905 Gene3D - 659 748 IPR012677 -
Bpe05g01101 905 Gene3D - 411 500 IPR012677 -
Bpe05g01101 905 MobiDBLite consensus disorder prediction 58 338 - -
Bpe05g01101 905 SUPERFAMILY RNA-binding domain, RBD 853 898 IPR035979 GO:0003676
Bpe05g01101 905 Coils Coil 193 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01101 K12837 U2AF2; splicing factor U2AF 65 kDa subunit - jre:108991202 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01101 Bpe-Chr5:23413146 Bpe14g01028 Bpe-Chr14:7641928 6.92E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008034 0 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g01101 Bpe_Chr05 FPKM 65.530029 71.858292 52.264713 57.787449 56.821072 56.191151 55.418434 77.063263 81.280365 74.980003