Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01117 ATGGCCGCCGAGCAAGAGTCTGCATTTTCTTCGCCTATGAAGAAGTGTAAGAGGAAGAGGAAACGAACCCAGATGGATCCCGAACTGGAACGCCTTGATTCGCTCGCCTGGAAATCCTCTTTCCCTCCCAACGATCCCTTTTCGATGTTCATTGGTTCTAACGAACTGGAAGGAGGGTTTCTTTCATTAGAAGAGATTGACGAGGCCCAATATGGCTCGGAAGTTCCTGAAATTGTAACTGGTGGCAGTAAGTTCAAAAAAATTACTATGATAACGAAGAAACAGGACAATGGCAATGAATCTGAGGGCAGTGATAAGAGTCAAGGTAAAGTGGAAGAGAGAGTGGAGCGAGAAGAGAATGTTGAGACTACAAAAAAGAGGAAGAAGAATAATAATTTAAACAAAATCCCAGAAGAGGAGAAACTAGTCGATAGAGATGTTGATGGCTGTAGTAGCAATGAGACTGAGTTAAAGTTTGAAGAAAAAATGGCAGACAAAAATAATGCCGAGAAAAGAAAGAAGAAAAAGAAAAAGAAGATGAATAAGGGGACAGAGAAAACTTACGAGAACGGGGAATCGGCTGCAGGCTATGCTGAAGAAAACATGAATGAATTTGAAGGGAAACCAATGGATGTAACTGAATTTTATGCATGGAATGAGTTGAGACTTCATCCTCAGCTTATGAACTCAATCTACAAACTTGGATTCAAGGAACCCACCCCAATACAGAAAGCTTGCATTCCTGCTGCTGCTCACCAGGGAAAGGATGTTGTTGGTGCGGCAGAGACTGGATCTGGAAAGACACTAGCTTTTGGGCTGCCGATTTTGCAACGGCTCTTAGAGGAACAGGAAAAGGCTGGCAGAATTAAGGAAGGAAAGGAAGAAGAAGATGATAATGCTTTGAGAGGCTTACGTGCTCTTATAATTACTCCAACAAGGGAACTAGCTCTTCAGGTCACTGATCATCTCAAGGCAGTTGCAGAGGGCACAAATACTAGAGTAGTTCCTATTGTTGGTGGGATGTCAACAGAAAAACAGGAAAGACTTCTAAGATCAAGACCTGCGATTATTGTTGGCACTCCAGGGAGGCTCTGGGAACTTATGTCTGGAGGGGAAAAGCATCTTTTGCACATGTTGTCATTTTTTGTACTAGATGAGGCCGATCGTATGATCGAAAATGGGCATTTTCACCAGTTGCAGTCCATAATTGACATGCTTCCCAGTACTAATGGCTCTGTTGAAGGCAAATCTCAAAGTTTAGATAATGGCGCGACAACCGGACAGAGAAAGAAAAGACAAACATTTGTTTTTTCTGCTACCTTATCCCTTTCTTCTGATTTTCGTAAGAAACTAAAACGTGGATCGGAAAGATCAAAGCAATCAGGCTCTGGTGATTTGAATTCTATTGAAGCCCTTTCTGAGCGAGCTGGAATGAGAGATAATGCTGCTATCATTGACCTGACAAATGCGTCAATTTTAGTGCATAAGCTTGAAGAATCGTTTATAGAATGCAGGGAAGAGGATAAAGATGCCTATTTGTATTACATTCTGAGCGTTCATGGGCAAGGCCGCACAATAGTTTTTTGTACATCAATTGCTGCTTTGCGACGGGTTGCTGCCCTCTTGAGCATCCTCGGTGTAAATGCTTACACTCTTCATGCTCAGAAGCAGCAAAGATCTCGTTTAAAAGCAATGGATCGTTTTCGTTCCAGTGAAAATGGTACACTTATTGCTACAGATGTTGCAGCGAGAGGCCTTGATATTCCCGGTGTTCGTACTGTTATTCACTACCAACTTCCACATTCGGCCGAAGTTTATGTTCATAGAAGTGGGAGAACTGCTAGAGCTTCAGCTGATGGGTGCAGCATTACACTAATCTCCCCAAATGAAACTTCCAAATTTGCTTCATTGTGCAAATCATTCTCTAAGGAAAGCTTTCGGCAATTCCCCCTTGATCATTCATACATTCCGGGGATTATGAAACGTTTATCGCTTGCCCGCCAGATTGACAAGATCTTGAGAAAGGGCTCTCAGGAGAGGGCAAGGAAAAGCTGGTTGGAAGCTGGCGTTTCTCCATTACTACAAGACCAATTTGAAGAACTGGCTCGGCAAAAATTTGGTGGCGGGAACACAGGAGACAAGAAAAGAAAGAAACTAATGGTTATTGGTCAGGATTGTGTCGAACCAATCGAAGCGCTCAAAAGCTCCTGTCTTCAGGTAAATCTATCACTTTTTATGTTTTCTGGTGGTTATAGACATCCCCATGAATGGGGCTTCATTTAG 2283 42.71 MAAEQESAFSSPMKKCKRKRKRTQMDPELERLDSLAWKSSFPPNDPFSMFIGSNELEGGFLSLEEIDEAQYGSEVPEIVTGGSKFKKITMITKKQDNGNESEGSDKSQGKVEERVEREENVETTKKRKKNNNLNKIPEEEKLVDRDVDGCSSNETELKFEEKMADKNNAEKRKKKKKKKMNKGTEKTYENGESAAGYAEENMNEFEGKPMDVTEFYAWNELRLHPQLMNSIYKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEQEKAGRIKEGKEEEDDNALRGLRALIITPTRELALQVTDHLKAVAEGTNTRVVPIVGGMSTEKQERLLRSRPAIIVGTPGRLWELMSGGEKHLLHMLSFFVLDEADRMIENGHFHQLQSIIDMLPSTNGSVEGKSQSLDNGATTGQRKKRQTFVFSATLSLSSDFRKKLKRGSERSKQSGSGDLNSIEALSERAGMRDNAAIIDLTNASILVHKLEESFIECREEDKDAYLYYILSVHGQGRTIVFCTSIAALRRVAALLSILGVNAYTLHAQKQQRSRLKAMDRFRSSENGTLIATDVAARGLDIPGVRTVIHYQLPHSAEVYVHRSGRTARASADGCSITLISPNETSKFASLCKSFSKESFRQFPLDHSYIPGIMKRLSLARQIDKILRKGSQERARKSWLEAGVSPLLQDQFEELARQKFGGGNTGDKKRKKLMVIGQDCVEPIEALKSSCLQVNLSLFMFSGGYRHPHEWGFI 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23515564 23521282 + Bpe018534.1 Bpe05g01117 104894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01117 760 PANTHER RNA HELICASE 105 693 - -
Bpe05g01117 760 Coils Coil 152 186 - -
Bpe05g01117 760 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 383 391 IPR000629 -
Bpe05g01117 760 SMART ultradead3 235 461 IPR014001 -
Bpe05g01117 760 SMART helicmild6 536 617 IPR001650 -
Bpe05g01117 760 MobiDBLite consensus disorder prediction 158 188 - -
Bpe05g01117 760 Pfam Helicase conserved C-terminal domain 508 616 IPR001650 -
Bpe05g01117 760 Pfam DEAD/DEAH box helicase 240 442 IPR011545 GO:0003676|GO:0005524
Bpe05g01117 760 Gene3D - 161 455 IPR027417 -
Bpe05g01117 760 MobiDBLite consensus disorder prediction 90 140 - -
Bpe05g01117 760 Gene3D - 491 652 IPR027417 -
Bpe05g01117 760 CDD DEADc_DDX24 227 486 - -
Bpe05g01117 760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 664 IPR001650 -
Bpe05g01117 760 Coils Coil 276 296 - -
Bpe05g01117 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 633 IPR027417 -
Bpe05g01117 760 CDD SF2_C_DEAD 497 626 - -
Bpe05g01117 760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 248 459 IPR014001 -
Bpe05g01117 760 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 105 693 - -
Bpe05g01117 760 MobiDBLite consensus disorder prediction 1 27 - -
Bpe05g01117 760 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 216 244 IPR014014 GO:0003724
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01117 K14805 DDX24, MAK5; ATP-dependent RNA helicase DDX24/MAK5 [EC:3.6.4.13] - mnt:21397613 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01117 Bpe-Chr5:23515564 Bpe08g00440 Bpe-Chr8:2776144 3.85E-63 dispersed
Bpe05g01117 Bpe-Chr5:23515564 Bpe08g00949 Bpe-Chr8:11888691 1.68E-46 transposed
Bpe05g01117 Bpe-Chr5:23515564 Bpe11g00406 Bpe-Chr11:3099426 1.03E-46 transposed
Bpe05g01117 Bpe-Chr5:23515564 Bpe11g00892 Bpe-Chr11:6574671 1.46E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g01117 Bpe_Chr05 FPKM 21.306059 20.31386 14.841129 17.503107 21.731274 20.155519 19.949387 17.734632 17.787664 18.257061