Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01123 GTCATTAGCAGATTGTGTTGGAACAGAAATTATGCAGCCAAAGACATTAAATTTGGGGTTGAGGCTCGAGCTCTCATGCTTAAGGGAGTTGAGGAACTTGCGGAAGCAGTTAAAGTTACAATGGGTCCTAAGGGGCGTAATGTTGTGATTGAACAAAGCTATGGCGCTCCAAAGGTGACAAAAGATGGTGTAACTGTTGCCAAGAGCATTGAGTTCAAAGACAAAGTCAAGAATATCGGCGCTAGCCTTGTTAAACAGGTTGCCAATGCAACAAATGATGCGGCAGGCGATGGGACCACATGTGCTACACTCCTTACTCGTGCAATATTTGCTGAAGGGTGCAAGTCAGTTGCTGCAGGGATGAATGCAATGGACTTAAGACGAGGCATCAGCATGGCAGTTGATGCTGTGGTAACAAACTTGAAGAGCAGAGCACGAATGATTAGCACATCTGAAGAGATAGCCCAGGTGGGAACAATATCTGCAAATGGAGAAAGGGAAATTGGTGAGCTGATTGCCAAGGCTATGGAAAAAGTTGGAAAAGAGGGAGTCATTACGATCTCAGATGGAAAGACATTGTATAATGAGTTGGAAGTTGTTGAAGGAATGAAATTAGACAGGGGATACATATCTCCTTATTTCATTACAAACCAAAAAAACCAAAAATGTGAATTGGAAGATCCCATTATTTTAATCCATGAAAAGAAAATATCCAGCATTAATGGAGTTGTAAAAGTTTTAGAATTAGCTCTGAAGAGACAAAGACCCTTGCTCATTGTTGCTGAAGATGTTGAAAGTGATGCGCTGGCCACCCTTATTCTAAATAAACTTCGTGCCGGGATCAAGGTATGTGCTATTAAAGCGCCTGGTTTTGGCGAGAACAGGAAGTCCAATCTTCAGGACCTTGCTGTGCTCACAGGGGGTGATCTTATTACTGAAGAGCTTGGCTTAAATCTCGACAAAGTGGACCTAGATATGCTTGGTACTTGCAAGAAGGTCACTATTTCCAAGGATGACACAGTTATTCTTGATGGTGCCGGTGACAAAAAGGCTATTGAGGAAAGATGTGAACAGATAAGGTCTGGAATAGAGTTGAGCACTTCTGACTATGACAAAGAAAAGTTACAAGAGAGATTAGCTAAGCTTTCTGGTGGAGTGGCTGTATTAAAAATTGGAGGTGCCAGTGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTAACAGATGCGTTGAATGCCACCAAAGCAGCTGTAGAAGAGGGCATTGTTCCTGGTGGTGGTGTCGCACTTCTTTATGCATCGAAAGAGTTGGAGAAACTCCCAACTGCTAACTTCGATCAGAAAATAGGAGTCCAGATTATTCAAAATGCTCTGAAGACTCCTGTGCACACCATTGCTGCAAATGCTGGGGTTGAGGGTGCTGTTGTAGTTGGAAAGCTGTTAGAGCAAGATAACCCAGACCTCGGCTATGATGCTGCCAAAGGTGAATACGTAGATATGGTCAAGGCTGGAATAATAGATCCATTGAAAGTGATTAGGACTGCCTTAGTTGATGCTGCAAGTGTTTCATCTTTGATGACGACAACCGAAGCAGTCGTTTCAGAACTCCCGAAGGACGACAAAGAGGCTCCATCAATGGGTGGTGGTATGGGAGGAATGGATTATTGA 1665 43.3 VISRLCWNRNYAAKDIKFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDAAGDGTTCATLLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPIILIHEKKISSINGVVKVLELALKRQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSNLQDLAVLTGGDLITEELGLNLDKVDLDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSGIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELEKLPTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVSELPKDDKEAPSMGGGMGGMDY 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23560919 23564516 + Bpe018541.1 Bpe05g01123 104900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01123 554 Hamap Chaperonin GroEL [groEL]. 12 552 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 SUPERFAMILY GroEL equatorial domain-like 16 532 IPR027413 -
Bpe05g01123 554 Pfam TCP-1/cpn60 chaperonin family 33 534 IPR002423 GO:0005524
Bpe05g01123 554 MobiDBLite consensus disorder prediction 535 554 - -
Bpe05g01123 554 SUPERFAMILY GroEL apical domain-like 195 386 IPR027409 -
Bpe05g01123 554 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 3 547 - -
Bpe05g01123 554 SUPERFAMILY GroEL-intermediate domain like 148 215 IPR027410 -
Bpe05g01123 554 Gene3D GroEL 202 383 IPR027409 -
Bpe05g01123 554 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 3 547 - -
Bpe05g01123 554 ProSitePatterns Chaperonins cpn60 signature. 415 426 IPR018370 GO:0005524|GO:0006457
Bpe05g01123 554 PRINTS 60kDa chaperonin signature 360 385 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 PRINTS 60kDa chaperonin signature 37 63 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 PRINTS 60kDa chaperonin signature 278 301 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 PRINTS 60kDa chaperonin signature 408 429 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 PRINTS 60kDa chaperonin signature 93 120 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 Gene3D - 16 532 IPR027413 -
Bpe05g01123 554 TIGRFAM GroEL: chaperonin GroL 13 537 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 CDD GroEL 14 534 IPR001844 GO:0042026|GO:0140662
Bpe05g01123 554 Gene3D - 147 420 IPR027410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01123 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - ming:122092091 1003.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g01053 Bpe05g01123 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g01123 Bpe-Chr5:23560919 Bpe11g00952 Bpe-Chr11:7086918 1.13E-165 dispersed
Bpe06g00778 Bpe-Chr6:18038535 Bpe05g01123 Bpe-Chr5:23560919 0 transposed
Bpe04g01053 Bpe-Chr4:7735958 Bpe05g01123 Bpe-Chr5:23560919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g01123 Bpe_Chr05 FPKM 9.292096 9.660563 8.661221 9.436734 8.694665 5.718271 5.773952 8.195018 9.19862 9.890205