Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01133 ATGACGACCGTCGAGCAAGTTTTCAGAGCTCAGAGGGCTGGCGGTCCGGCCACCGTCCTGGCCATTGGAACAGCCACCCCGCCCAATTGTGTTGATCAGAGCACTTATCCAGACTTCTACTTTCGCGTCACTAAGAGCGAGCACAAAACTGAACTCAAGGAGAAATTCAAGCGGATGTGCGAAAAGTCGATGATCAAGAAGAGGTATCTGTACTTGACGGAGGAGATTCTGAAGGAGAACCCTCAAGTTTGTGTCTTCGAAGCACCTTCTCTTGAAGCTAGACAAGAAATCGGGAGGTCGGAGGTTTCTCGTCTAGGAAAAGAGGCGGCGATGAAAGCTATAAAAGAATGGGGACAGCCTAAATCGAAGATTACCCACGTTGTTTTCTGCACAACCACCTGCATCGATATGCCCGGAGCCGACTACCACCTCACCATGCTCTTAGGCCTCAACCCGTCCGTCAAACGCTTTATGATTTACCAGCAAGGTTGCTTCGCCGGTGGTACCGTTCTCCGACTGGCCAAGGATCTGGCTGAGAACCACAAAGGTGCTCGTGTTCTTGTGGTTTGCTCGGAGATGACCACAGTCACGTTCCATGGTCCGAGTGAAAGCCACATCGACAGTCTCGTGGCACAGGCTCTCTTCGGCGACGGCGCCGCTGCTCTCATCGTCGGCTCAGATCCGATCCCCTATGTGGAGAAACCGTTGTTCCAAATAGTCTCCGCCGCTCAAACTATTCTTCCCGACAGCGATGGCGCTATCATTGGCCGTCTCAGGGAAGCCGGCCTGACCTTGAACCTTGTGAAAGACGTCCCTGGTTTAATCTCAAAGAACATCGAGCAAAGCTTGGTCGAGGCGTTTAAGCCATTCGGTATCTCAGATTGGAACTCCATCTTCTGGATCGTCCACCCCGGCGGTCGGGCGATCTTGGACAAGGTGGAGCAGAAACTGGGTCTGAAGGAGGAGAAAATGCGAGCCACCAGACAAGTTCTATCCGATTATGGCAACTTATCCAGCGCTTGCGTTTTTTTCATCATGGACGAGATGAGGAAGAAGTCGGCGGCTGAAGGGCTGAAGAGAACCGGCGAAGGACTGGAGTGGGGCGTGCTGTTCGGGTTCGGGCCTGGCCTCACCGTGGAGACGGTGGTTCTGCACAGCGCCGCCGTTTAG 1170 53.68 MTTVEQVFRAQRAGGPATVLAIGTATPPNCVDQSTYPDFYFRVTKSEHKTELKEKFKRMCEKSMIKKRYLYLTEEILKENPQVCVFEAPSLEARQEIGRSEVSRLGKEAAMKAIKEWGQPKSKITHVVFCTTTCIDMPGADYHLTMLLGLNPSVKRFMIYQQGCFAGGTVLRLAKDLAENHKGARVLVVCSEMTTVTFHGPSESHIDSLVAQALFGDGAAALIVGSDPIPYVEKPLFQIVSAAQTILPDSDGAIIGRLREAGLTLNLVKDVPGLISKNIEQSLVEAFKPFGISDWNSIFWIVHPGGRAILDKVEQKLGLKEEKMRATRQVLSDYGNLSSACVFFIMDEMRKKSAAEGLKRTGEGLEWGVLFGFGPGLTVETVVLHSAAV 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23642955 23644231 - Bpe018551.1 Bpe05g01133 104910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01133 389 Gene3D - 236 389 IPR016039 GO:0016746
Bpe05g01133 389 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Bpe05g01133 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 386 IPR012328 -
Bpe05g01133 389 SUPERFAMILY Thiolase-like 235 385 IPR016039 GO:0016746
Bpe05g01133 389 Gene3D - 1 235 IPR016039 GO:0016746
Bpe05g01133 389 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Bpe05g01133 389 CDD CHS_like 16 384 - -
Bpe05g01133 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 3 387 IPR011141 GO:0009058|GO:0016747
Bpe05g01133 389 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Bpe05g01133 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Bpe05g01133 389 PANTHER CHALCONE SYNTHASE 2 3 387 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01133 K00660 CHS; chalcone synthase [EC:2.3.1.74] - csin:114270235 647.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01059 Bpe-Chr4:7885684 Bpe05g01133 Bpe-Chr5:23642955 0 dispersed
Bpe04g01061 Bpe-Chr4:7925526 Bpe05g01133 Bpe-Chr5:23642955 0 dispersed
Bpe05g01133 Bpe-Chr5:23642955 Bpe12g00109 Bpe-Chr12:778428 1.34E-96 dispersed
Bpe05g01133 Bpe-Chr5:23642955 Bpe14g01219 Bpe-Chr14:9116818 2.91E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g884 Blo01g00322 . . Bda08g00027 . . Bma04g01045 Bma05g01285 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01133 . . . . . . . Cma17g00113 . . Cpe12g00099 . . . . . . . . . . . . . . . . . . .
Vvi15g354 Blo01g00320 . . Bda08g00027 . Bpe05g01133 . . . . Cma06g00969 Cma14g02150 . . Sed12g0055 Cpe08g00632 . Bhi01g00569 Tan10g0049 Cmetu11g2602 . Hepe05g2076 . Lcy11g2105 Cla05g00036 Cam05g0040 Cec05g0039 Cco05g0043 Clacu05g0033 Cmu05g0035 Cre05g0099 . . . . Lsi05g02196 . . . Blo02g00383 . . . . . Bma02g01028 . . Cmo06g00992 Cmo14g02220 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000620 7 3 7 12 3 2 1 2 2 1 1 2 3 2 1 2 2 4 3 2 1 3 2 2 2 6 2 4 3 16 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe05g01133 Bpe_Chr05 FPKM 1.018008 1.237288 3.819596 4.106042 1.422458 1.394391 1.77058 0.844694 0.850777 1.107886