Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe05g01140 ATGGAATCGAGTTCGAGTTTGAGCAAAAGTGCGTTGGCAGTGAAAGAATCATCTCCAAACTACTACCCATACCCTCCGCCTCTTGCTAAATACGAGGATGTTATAGCCAGCCCGAAGCTTTTCATTTCCAGTTTGGAGAAACTCCATGCTTCTCTTGGAACCAAGTTCATGGTCCCCATTATAGGGGGGAAAGAGCTGGACTTGCATCGTCTTTTTGTGGAAGTCACTGCTCGTGGTGGCATTGAGAAGATCTCTCGTAGATTGTGTCGTCTCCTTGGTCTGCTCCTTACATGTTCTGGTGATCAGATCATCAGAGAAAGACGATGGAAGGAAGTCACGGCCGTTTTCAACTTCCCGTCGACGGCTACCAACGCTTCTTTTGTGCTGAGAAAGTATTACGTTTCGCTGCTTCACCACTTCGAACAAATTTACTTCTTCAAAGCTCAAGGCTATTCCCATGGCTTTGCTGATTCATTGCAGAGCCCTCAGGGAACGCCGTTTTTACATCGATCGGCTGATAATCAACAAGCCACGATCCATCAATCGAAATCTAACCCTTCGCCACTTCCTTCTGACGGCCGAAATGTTGGGTCGTGGAGTGGAAATTCGGTCGTCGGTGTAATTGACGGGAAATTCGAAAGTGGGTATCTTGTCACAGTTACGATAGGTTCGGAGACTTTAAAAGGGGTTCTTTACCAAACATCGTTAAACCAGTCGGAAACAGTTTCAGTCGGTATGTTTTCCGACGGTAAAGATATTACTCCAGCATTGCCAGTCGTCCAACGCCGCCGGCGCCGGAGAAAGAAGTCGGAAATAAGACGGCGCGACCCTGCTCATCCGAAGCCGAACAGAAGCGGCTACAACTTTTTCTTCGCCGAGCAGCATGCTAGGCTCAAACCACTCTACCCTGGAAGAGATAGAGAGATCAGCAGAATGATTGGCGAACTGTGGAACAAACTGAACGAATCCGAAAGAACAGTCTATCAGGATAAAGCGATGAAAGATAAAGAACGATACAGAGCTGAAATGGAGGACTACAGAGAGAGGCTAAGAACAGGTCAGGTAATAAGAGATGCAGTTCCGTTACAACAGCGTCTTCCTCAGCCTGTAAACATGGAAGTAGAAGCTGACGTGAAGATCGAAGAGGCCGAGAATGCGGACTCACCTGAAACGCCATATAACGAGAGTAGTTTGAGTAAATGCGAATCCGAAGATCATCAAATGGCCGAAGATTCAGACGAAAATACATCTCGAAGAAACATTAATGTCGAGATCGCTGTTGAAGATCCGGGTTTTGAGGAGGGAAAGACAGAAGAAAGAGGAGTAGAGGAGTCGTGCAGTCCAATGAAAACGAAAGATGATTGA 1365 46.74 MESSSSLSKSALAVKESSPNYYPYPPPLAKYEDVIASPKLFISSLEKLHASLGTKFMVPIIGGKELDLHRLFVEVTARGGIEKISRRLCRLLGLLLTCSGDQIIRERRWKEVTAVFNFPSTATNASFVLRKYYVSLLHHFEQIYFFKAQGYSHGFADSLQSPQGTPFLHRSADNQQATIHQSKSNPSPLPSDGRNVGSWSGNSVVGVIDGKFESGYLVTVTIGSETLKGVLYQTSLNQSETVSVGMFSDGKDITPALPVVQRRRRRRKKSEIRRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGRDREISRMIGELWNKLNESERTVYQDKAMKDKERYRAEMEDYRERLRTGQVIRDAVPLQQRLPQPVNMEVEADVKIEEAENADSPETPYNESSLSKCESEDHQMAEDSDENTSRRNINVEIAVEDPGFEEGKTEERGVEESCSPMKTKDD 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23684783 23686514 + Bpe018558.1 Bpe05g01140 104917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe05g01140 454 SMART bright_3 36 146 IPR001606 GO:0003677
Bpe05g01140 454 Gene3D High mobility group box domain 264 359 IPR036910 -
Bpe05g01140 454 SUPERFAMILY ARID-like 33 150 IPR036431 GO:0003677
Bpe05g01140 454 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 4 86 - -
Bpe05g01140 454 MobiDBLite consensus disorder prediction 429 454 - -
Bpe05g01140 454 SMART ARID_2 32 141 - -
Bpe05g01140 454 MobiDBLite consensus disorder prediction 399 418 - -
Bpe05g01140 454 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 101 417 - -
Bpe05g01140 454 SMART hmgende2 279 348 IPR009071 -
Bpe05g01140 454 SUPERFAMILY HMG-box 273 352 IPR036910 -
Bpe05g01140 454 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 280 347 IPR009071 -
Bpe05g01140 454 ProSiteProfiles ARID domain profile. 35 145 IPR001606 GO:0003677
Bpe05g01140 454 MobiDBLite consensus disorder prediction 172 196 - -
Bpe05g01140 454 Pfam ARID/BRIGHT DNA binding domain 39 141 IPR001606 GO:0003677
Bpe05g01140 454 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 4 86 - -
Bpe05g01140 454 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 101 417 - -
Bpe05g01140 454 MobiDBLite consensus disorder prediction 260 287 - -
Bpe05g01140 454 Pfam HMG (high mobility group) box 280 347 IPR009071 -
Bpe05g01140 454 CDD HMGB-UBF_HMG-box 280 344 - -
Bpe05g01140 454 Gene3D - 29 153 IPR036431 GO:0003677
Bpe05g01140 454 Coils Coil 329 349 - -
Bpe05g01140 454 MobiDBLite consensus disorder prediction 260 274 - -
Bpe05g01140 454 CDD ARID_HMGB9-like 37 141 IPR045303 GO:0003677
Bpe05g01140 454 MobiDBLite consensus disorder prediction 382 454 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe04g01069 Bpe05g01140 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00236 Bpe-Chr1:1440335 Bpe05g01140 Bpe-Chr5:23684783 5.73E-40 dispersed
Bpe05g01140 Bpe-Chr5:23684783 Bpe05g00682 Bpe-Chr5:20451148 4.32E-07 dispersed
Bpe02g00331 Bpe-Chr2:2162620 Bpe05g01140 Bpe-Chr5:23684783 3.15E-75 transposed
Bpe09g00098 Bpe-Chr9:675154 Bpe05g01140 Bpe-Chr5:23684783 2.58E-18 transposed
Bpe04g01069 Bpe-Chr4:8141966 Bpe05g01140 Bpe-Chr5:23684783 1.21E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21521 PF01388 ARID 4.50E-15 CL0123 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe05g01140 - - tcc:18602725 492.656